PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG127600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 284aa    MW: 28576.7 Da    PI: 7.3105
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG127600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof111.44.1e-353592560
               zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvP..vGggrrknkk 60
                         +++cprC s ntkfCyynny+l+qPr+fCkaCrryWtkGG lrnvP  vGgg+rk+k 
  Pavir.4KG127600.1.p 35 EVRCPRCGSPNTKFCYYNNYNLAQPRHFCKACRRYWTKGGNLRNVPvpVGGGCRKHKP 92
                         689*****************************************75227******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.6E-303591IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-223691IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.8073692IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MQELEPVPGM AGRLFGAGAA ANGGSSATEQ HGAAEVRCPR CGSPNTKFCY YNNYNLAQPR  60
HFCKACRRYW TKGGNLRNVP VPVGGGCRKH KPKRPAAADG SDRNGKIPRS GCAGAGAGAS  120
SSPAADGDAL VSSAFSAVAE PSSIGSGPSS SVEEVGAGRC AAGDMQRTLL VPPPAPVFAD  180
QAAVFASLFA TPRPLPGFSS SAHPMAEERA ASSLAEQRSP ESDAAAAAGT APFSGSARPD  240
GALAAGAGVF ELAGGIAGDA SLPEYWNPGS WTDPYPDPTI YLP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.72715e-39callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG127600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3749733e-55AK374973.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081L07.
GenBankAM0843523e-55AM084352.1 Hordeum vulgare subsp. vulgare dof4 gene for dof zinc finger protein 4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812528.11e-148dof zinc finger protein 4-like
TrEMBLA0A2S3HJX71e-147A0A2S3HJX7_9POAL; Uncharacterized protein
STRINGPavir.Da01417.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64963050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.15e-29DOF zinc finger protein 1