PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG326200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 740aa    MW: 80134.2 Da    PI: 6.9324
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG326200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.49.1e-16426466242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+C+CkkskClk+YCeCfaag++Cse C+C++C N+e++
  Pavir.3NG326200.1.p 426 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCTCQGCLNNESH 466
                          689**********************************9976 PP
2TCR521.4e-16511549139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN 
  Pavir.3NG326200.1.p 511 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNA 549
                          589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.6E-17425466IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.873426551IPR005172CRC domain
PfamPF036381.4E-11428464IPR005172CRC domain
SMARTSM011148.6E-17511552IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.4E-12513549IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MQDSPVFNFI NNLSPIPPPK PSDTAHNVQL FKSSDLAPVS SIFASPHVNP AKEPKILIRD  60
DSVQLPQDLH SPNSVRTRVG STITFRMIRC RDIVSENCNT NCRLNEAPID SSDHTSNSES  120
QLPQSMQNGV GGVESDKDQC ADVKTDLTMS QECTDLEGMN LDESGPDKMD SSHSGMDLHE  180
SQLSEQKKDE AIAYNGDYMI ANQPSSDMLT LGLPFVTETQ SVNDTQKADN SDSGKSLLSE  240
EPNYYIQNSA HEPHLHWTGA VEGASVDYTP QALPGALQSQ LMPCDNLSDP QDYMPTEKNG  300
LSQHLRGMHK ASDRHSVNST TPKCKTIPGD INSKLLRTPP CALPGIGLHL NALAAIPKEK  360
IVCRDIQSSI KNESSSFPCP AGSSPSPSEQ NIINDEFAQR TDVASAEPSS QGNPKKKRHK  420
FDDGTSCKRC SCKKSKCLKL YCECFAAGVY CSEPCTCQGC LNNESHMETV LSTRQQIESR  480
NPLAFAPKVI HTSEPGLELG DFNNKTPASA RHKRGCNCKK SSCLKKYCEC FQGGVGCSIS  540
CRCEGCKNAF GTREGVAALS IEEPKQASEE NNVCVKEEKC EINKQLVIYQ ATDLAPTENL  600
LTTPSMVECR PLACLPPPSS KKPSSKKPRS STKLVGHPSR LCNSQAPLKT DILLAQFGNY  660
AEMVLGDSTS DNLKGNSSPQ TSVKVVSPNK KRVSPPRMGT GLSPICKSGR KLILKSIPSF  720
PSLGGDLNNE DQKSKTPAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1543054814120Protein lin-54 homolog
5fd3_B2e-1543054814120Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.116190.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG326200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809749.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2T7EJ230.0A0A2T7EJ23_9POAL; Uncharacterized protein
STRINGPavir.Ca02752.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-71Tesmin/TSO1-like CXC domain-containing protein