PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.3NG309600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 330aa MW: 37935.9 Da PI: 7.2031 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.8e-18 | 59 | 146 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk + +++g +++p kf+++++ + +k l l+ sg+ W + + +k++++ +lt+GW++Fvka++Lke+D ++F+ g+s+f Pavir.3NG309600.1.p 59 FFKLM--TGDFARG-ISIPAKFVKNFNRQ--ITKGLDLKVASGEIWYFSV--EKRDDELLLTSGWEDFVKAHELKEKDLLIFTWRGNSSF 141 55655..4555666.9*******888766..44569999***********..*******************************9888888 PP ..EEEEE CS B3 91 elvvkvf 97 + +f Pavir.3NG309600.1.p 142 --EILIF 146 ..66666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.47E-22 | 52 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.422 | 56 | 149 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.84E-19 | 58 | 146 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-21 | 58 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-13 | 59 | 149 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-15 | 59 | 147 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MRTHRHTLSL TSRRSELLHL GSSDALKECS IMVEKGCESC REWQERCYWE HMDVTKIRFF 60 KLMTGDFARG ISIPAKFVKN FNRQITKGLD LKVASGEIWY FSVEKRDDEL LLTSGWEDFV 120 KAHELKEKDL LIFTWRGNSS FEILIFEANG CEKLSSLFAN RIGPNLRKHL NDTAGQHAEP 180 YTLTDYEEAS MALQLVGSTH MASNSKKYHC KAKPRKEPQS PNSSSYHVKH EAIEEEESDD 240 MYANSKFYYS RMANQLTEEE KENILSLASI QQENPAFVAV LKKSHRHAQE QLSRPSPVDL 300 LLIIYRKEHK ISYFVGQAER TSGLSDTIT* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.3NG309600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808343.1 | 1e-160 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 6e-89 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A3L6SVM5 | 1e-169 | A0A3L6SVM5_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J16679.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-24 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.3NG309600.1.p |