PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG309000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 441aa    MW: 50154.5 Da    PI: 9.7151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG309000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-17211011399
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           +r ++p+kf++++   ++ s +++le ++g++++v++   + +++ vl++GW++F+ a +L+ gD +vF+ +  ++ +++v++f+ 
  Pavir.3NG309000.1.p  21 DDRSTIPRKFVANIR--EHLSEEVKLEAPDGETYTVQV--AREQNESVLRSGWSDFACAYELQLGDLLVFRNS--EKSHFKVRIFDP 101
                          46789******8886..458889***************..999999*************************44..555559999986 PP
2B332.61.5e-102182723894
                          EEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3  38 ledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          l  ++g + W ++l +  ++++y  ++GW +F ++n+L+egD++vF+ ++++++  v 
  Pavir.3NG309000.1.p 218 LSRLDGsKIWAINLDI-TTKEQYAVSTGWIDFIRDNKLREGDICVFQPSKSKDG--VT 272
                          4455555899999943.3334599999********************8887555..33 PP
3B355.51e-173484371099
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                          ++k ++l + +++a+++   + e++t++l+ +     ++We  +  r +++ry+l++GW++Fv++n+Lk gD ++F l+ + ++ +++v+
  Pavir.3NG309000.1.p 348 HNKMCLLEFGRDYATKYL--PCENQTMRLRRPGAnkdNTWEAVF--RVQDRRYTLGRGWRQFVDDNKLKPGDLCLFNLMTNtKQLTMNVH 433
                          333355666666776663..34566999999877777*******..*********************************888******** PP

                          EE-S CS
                   B3  96 vfrk 99 
                          ++rk
  Pavir.3NG309000.1.p 434 IIRK 437
                          *998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.5E-911102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-1919104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-2019104IPR015300DNA-binding pseudobarrel domain
PfamPF023624.4E-1421100IPR003340B3 DNA binding domain
CDDcd100171.70E-1822100No hitNo description
PROSITE profilePS5086311.98426102IPR003340B3 DNA binding domain
SMARTSM010190.051187279IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-9198268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-9214270IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.56216281IPR003340B3 DNA binding domain
PfamPF023628.4E-8218272IPR003340B3 DNA binding domain
CDDcd100177.11E-7225276No hitNo description
Gene3DG3DSA:2.40.330.107.3E-20329437IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-20330437IPR015300DNA-binding pseudobarrel domain
CDDcd100175.00E-14335436No hitNo description
SMARTSM010192.3E-5337438IPR003340B3 DNA binding domain
PROSITE profilePS5086312.323339438IPR003340B3 DNA binding domain
PfamPF023621.3E-15349437IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MNKSRTVCKE CIANHYWHHM DDRSTIPRKF VANIREHLSE EVKLEAPDGE TYTVQVAREQ  60
NESVLRSGWS DFACAYELQL GDLLVFRNSE KSHFKVRIFD PSGCEKELSC VPMDGTPCVK  120
GRKVSHGNHM QSSTGKRMAI GNPSVNEHVP SSEGIQKPMN SGGGVQKRTK SCIVLPTGYD  180
MTSEQRAQIT TLKQKIQPKL PFYITAMHRR SVASGILLSR LDGSKIWAIN LDITTKEQYA  240
VSTGWIDFIR DNKLREGDIC VFQPSKSKDG VTLIFHPLEE NHRLQPPGHI PSTDTISPRH  300
GVPKPPYMLP CRKTLSDQQM SELNKKVEAI QSKIPIYVAV MHNSNTAHNK MCLLEFGRDY  360
ATKYLPCENQ TMRLRRPGAN KDNTWEAVFR VQDRRYTLGR GWRQFVDDNK LKPGDLCLFN  420
LMTNTKQLTM NVHIIRKRST *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG309000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808338.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_025808339.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
SwissprotQ2QMT61e-132Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A3L6T2R00.0A0A3L6T2R0_PANMI; Uncharacterized protein
STRINGPavir.Cb00423.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-20B3 family protein