PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG294600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 358aa    MW: 38191.2 Da    PI: 10.7161
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG294600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31291348359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Pavir.3NG294600.1.p 291 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 348
                          9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.5E-18242287IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.2E-34277348IPR003657WRKY domain
PROSITE profilePS5081130.148284347IPR003657WRKY domain
SuperFamilySSF1182905.23E-27287348IPR003657WRKY domain
SMARTSM007744.4E-38289349IPR003657WRKY domain
PfamPF031064.9E-27291347IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEVEVANRA AVESCQRVLA LLSQSQQQDP ALLKSIASET GEACAKFRKV TALLSNGGSS  60
GHARGRFSRR GRPAGSFTLK SLLGSSSDTP SELMPSTAAA PSPSTSYAQL RARISGAPDP  120
PGLDLASSSS KSGTHPFGAP KMVQPLSVQF QIGNVAHRYP FHQQPSRQKL QAEMFKRSNS  180
GISLKFDSPS PSGGAGTMSS ARSFMSSLSM DGSVASLDGK RPFHLVGAPV ASDSADANRA  240
PKRRCTGRGQ DGTGKCATTG RCHCSKRRKL RIKRSIKVPA ISNKIADIPP DEYSWRKYGQ  300
KPIKGSPHPR GYYKCSSVRG CPARKHVERC VDDPAMLIVT YEGEHNHTRL PAQSAQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20277352276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243RAPKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.294000.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG294600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809630.10.0protein WRKY1-like isoform X1
SwissprotO043361e-94WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A2T7EIW20.0A0A2T7EIW2_9POAL; Uncharacterized protein
TrEMBLA0A2T8KLW40.0A0A2T8KLW4_9POAL; Uncharacterized protein
STRINGPavir.J38176.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.13e-67WRKY DNA-binding protein 39