PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG284800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 322aa    MW: 34623.6 Da    PI: 8.8972
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG284800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.64.3e-52131411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhP+d+el+++yL++k+ gk  ++  +  + +vd++kvePwdLp++++ + +ewyfFs +d+kyatg+r+nrat sgyWkatgk
  Pavir.3NG284800.1.p  13 LPPGFRFHPRDDELICDYLAPKLGGKVgFSGRRPpMVDVDLNKVEPWDLPAAASVGPREWYFFSLKDRKYATGQRTNRATVSGYWKATGK 102
                          79***********************9986665656***************88888999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v + +g+lvg++ktLvfy+grapkg+kt+Wvmheyr+
  Pavir.3NG284800.1.p 103 DRAVAR-RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRM 141
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-582166IPR003441NAC domain
PROSITE profilePS5100555.13813166IPR003441NAC domain
PfamPF023659.3E-2714141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSMSFLSMVE AELPPGFRFH PRDDELICDY LAPKLGGKVG FSGRRPPMVD VDLNKVEPWD  60
LPAAASVGPR EWYFFSLKDR KYATGQRTNR ATVSGYWKAT GKDRAVARRG ALVGMRKTLV  120
FYQGRAPKGR KTEWVMHEYR MEGALEQSSK FSSKDEDWVL CRVICKKKLP GGAASSKASR  180
GLATNGGHDT VPTSSPPLPP LMDTTLAQLQ AAMNTAAGAA CSGAVEQVPC FSSFNNIASN  240
NNTAAAAVAA AQPCYLPMVT GSHGMSFLDH GLPELGGCFD PLNCDKKLLK AVLSQFGGEV  300
VPSLPHEMAA GTATSTWMNH F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4911671169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG284800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805880.10.0NAC domain-containing protein 21/22-like
TrEMBLA0A2S3HFC20.0A0A2S3HFC2_9POAL; Uncharacterized protein
STRINGPavir.J34789.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100223144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.15e-75NAC family protein