PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG271500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 314aa    MW: 35447.2 Da    PI: 8.2412
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG271500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.71.8e-14162194133
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                          CsnC + +Tp+WR+gp+g  +LCnaCGl+ +++
  Pavir.3NG271500.1.p 162 CSNCFSCETPQWRNGPSGIQMLCNACGLRLKLE 194
                          ******************************987 PP
2GATA57.12.5e-18244278135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C ++kTp+WR+gp g+ktLCnaCG++y++ +l
  Pavir.3NG271500.1.p 244 CTHCMSSKTPQWRSGPLGPKTLCNACGVRYKSGRL 278
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.9E-12156207IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.573156210IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-14158202IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.08E-12159200No hitNo description
CDDcd002021.89E-12161193No hitNo description
PROSITE patternPS003440162187IPR000679Zinc finger, GATA-type
PfamPF003206.0E-12162194IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-16238292IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.925238274IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-14240302No hitNo description
Gene3DG3DSA:3.30.50.104.4E-14242276IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.88E-13243300No hitNo description
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
PfamPF003204.0E-16244278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDVHPANAAA DSLGDLFPHQ AAALESDESN LEWLSGYVDD CFSNSTSYTN PAFAIPAPTM  60
VNQGAGKPKL PPPSSSNGRR KKRSLASVMG NDDDQQYIIP LYVEPPLLLI DQKHWMAESE  120
LILPKKDKDQ EVCQQQEQEQ EEEKCEKGVF VQFRQERLVK RCSNCFSCET PQWRNGPSGI  180
QMLCNACGLR LKLENRFATI SEEHYGQETK KEQEPGKRQD KKKKMIKKTY VSEELSSEKP  240
EKRCTHCMSS KTPQWRSGPL GPKTLCNACG VRYKSGRLLP EYRPANSPTF VSCLHSNSHK  300
KVMQMRQAIA YKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216223KRQDKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG271500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810144.10.0GATA transcription factor 4-like
TrEMBLA0A3L6RBG90.0A0A3L6RBG9_PANMI; GATA transcription factor
STRINGPavir.Cb00086.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.18e-35GATA transcription factor 4