PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG269000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 301aa MW: 34100.3 Da PI: 7.9725

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG269000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154	6.8e-48	28	161	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 pGfrFhPtd+el+++yL++kve+k +++ ++ikevdiyk++PwdLp+ + ++++++wyfF+ r +ky+++ r+nr+t sg+Wka Pavir.3NG269000.1.p 28 FPGFRFHPTDQELLSFYLARKVEKKGFSI-DIIKEVDIYKHDPWDLPNearhvvQGAGDKEDWYFFCLRGRKYRNSIRPNRVTGSGFWKA 116 69*************************.99**********9646665433336679************************ PP NAM 86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk+++ ++ l glkk+Lv+y+g+a +g+ktdW+mhe+rl Pavir.3NG269000.1.p 117 TGIDKPIHGGagGECLLGLKKSLVYYRGSAGRGTKTDWMMHEFRL 161 ****98656667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.915	27	184	IPR003441	NAC domain
SuperFamily	SSF101941	5.62E-54	27	184	IPR003441	NAC domain
Pfam	PF02365	6.3E-24	29	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MEEKKPSERV KESGGGVEVG TEDDDLVFPG FRFHPTDQEL LSFYLARKVE KKGFSIDIIK 60 EVDIYKHDPW DLPNEARHVV QGAGDKEDWY FFCLRGRKYR NSIRPNRVTG SGFWKATGID 120 KPIHGGAGGE CLLGLKKSLV YYRGSAGRGT KTDWMMHEFR LPSTAGAAEL HDAEIWTICR 180 IFKRNMSYSR RCQQQKQEHG SKRCQQQLQY YYDYRYHHQH GASMMSSFGS SEASEAYPTD 240 HHQPFLLHGL HGVSSAKTTT TTSSGLMGAP LLPSMSVWSD PTTFRDSGST WDELGRIMEI 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-47	29	187	22	171	NAC domain-containing protein 19
3swm_B	6e-47	29	187	22	171	NAC domain-containing protein 19
3swm_C	6e-47	29	187	22	171	NAC domain-containing protein 19
3swm_D	6e-47	29	187	22	171	NAC domain-containing protein 19
3swp_A	6e-47	29	187	22	171	NAC domain-containing protein 19
3swp_B	6e-47	29	187	22	171	NAC domain-containing protein 19
3swp_C	6e-47	29	187	22	171	NAC domain-containing protein 19
3swp_D	6e-47	29	187	22	171	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269\|PubMed:22345491}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG269000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF282870	1e-73	JF282870.1 Panicum virgatum clone F12_PVCAG-3 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809001.1	1e-173	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	7e-73	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A3L6T553	0.0	A0A3L6T553_PANMI; Transcription factor JUNGBRUNNEN 1-like
STRING	Pavir.Cb00167.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-73	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Pavir.3NG269000.1.p

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]