PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG099300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 410aa MW: 44822.5 Da PI: 8.5909 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.7 | 8.1e-13 | 23 | 47 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G++CkF+H+p Pavir.3NG099300.2.p 23 EPDCSYYMRTGLCRFGATCKFNHPP 47 789********************97 PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 68 | 92 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Pavir.3NG099300.2.p 68 QPECQYYLKTGTCKFGATCKFHHPR 92 799********************96 PP | |||||||
3 | zf-CCCH | 31.2 | 3.8e-10 | 114 | 138 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+ ++CkF+H+p Pavir.3NG099300.2.p 114 EKECAYYLRTGQCKFASTCKFHHPP 138 679********************97 PP | |||||||
4 | zf-CCCH | 40.1 | 5.9e-13 | 275 | 300 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Pavir.3NG099300.2.p 275 DQPECQFYMKTGDCKFGAVCKFNHPK 300 689*********************96 PP | |||||||
5 | zf-CCCH | 37.6 | 3.6e-12 | 320 | 346 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ Pavir.3NG099300.2.p 320 PGEPVCTFYSRYGICKFGPNCKFDHPM 346 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.0E-6 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.948 | 20 | 48 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-10 | 23 | 47 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 25 | 48 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 26 | 46 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-6 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.441 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 67 | 94 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-10 | 68 | 92 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-5 | 71 | 93 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-6 | 110 | 139 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-4 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 111 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-7 | 114 | 138 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-5 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 275 | 300 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 276 | 302 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-5 | 279 | 301 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-6 | 318 | 345 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-7 | 319 | 346 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.99 | 319 | 347 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 321 | 346 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 324 | 344 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MWQMTLGGGE SIEHGPFPER IGEPDCSYYM RTGLCRFGAT CKFNHPPNRK LAVAAARMKG 60 EYPYRVGQPE CQYYLKTGTC KFGATCKFHH PREKAAIATR VQLNVLGYPI RPNEKECAYY 120 LRTGQCKFAS TCKFHHPPPS NTMVAVRGSI YSPGQSATSP GQHTYPGAVT NWTLSRSASF 180 IASPRWPGHS GYAQMIVPQG LVQVPGWNPY AAQMGSSSPD DQQRTPGTTQ YYASSHQSET 240 TAVGDHGMYP SYQPGSVPLG LYAVQGDNIF PERPDQPECQ FYMKTGDCKF GAVCKFNHPK 300 ERLIPAPNCA LSPLGLPLRP GEPVCTFYSR YGICKFGPNC KFDHPMGTLM YGTATSPTGD 360 APTMHYQLAS SPGHSERLLD GGSGRSHRIS QTDSQQIPSG NGSTEREMS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.12176 | 0.0 | callus| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG099300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810066.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q2QT65 | 0.0 | C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A3L6REA4 | 0.0 | A0A3L6REA4_PANMI; Zinc finger CCCH domain-containing protein 66-like isoform X2 | ||||
STRING | BRADI4G08050.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-155 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG099300.2.p |
Publications ? help Back to Top | |||
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