PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG076300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 303aa MW: 34180.4 Da PI: 9.6899

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG076300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.3	2.5e-18	133	212	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ ++GF +r ++s+++++ + t ++ vC + gk+++e+++ ++r+gC a++++ ++++g w+v++ + eHnH+++ Pavir.3NG076300.1.p 133 EFYNLYSWQIGFGIRYDRSRRNSQRT-KTIQDIVCGCAGKPRKENSR---------SSRCGCPAMMRIARSNSGGWYVKEHVAEHNHQMS 212 6****************9995555.67889****9997665.........99****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-15	133	212	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEAQGQLPAA ARMDKSDGQE GLESESSAVC DVSEDTTYVG YESGNEQRES SLASSDFTNN 60 EQLDGGNHTA AVQNRQGWKK RPRVGQIPDE KEETTMNPTA LEKALKSYAI RKNGLVVQPT 120 VGTHFDSMAE AFEFYNLYSW QIGFGIRYDR SRRNSQRTKT IQDIVCGCAG KPRKENSRSS 180 RCGCPAMMRI ARSNSGGWYV KEHVAEHNHQ MSQSFAKKQL WRSHRHIDTH TKRLIKHLRD 240 NNVNLSKVFS VISSFFGDYG NATFTKSNRW RAMLGITAQC RPRVLNQAII RSIMLRCTMD 300 LN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.35066	0.0	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG076300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753620.1	1e-74	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_020155776.1	5e-75	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024313565.1	1e-74	putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A287KCQ4	5e-74	A0A287KCQ4_HORVV; Uncharacterized protein
TrEMBL	A0A2X0SJT3	2e-74	A0A2X0SJT3_WHEAT; Uncharacterized protein
STRING	Pavir.J20130.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-13	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.3NG076300.1.p