PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG070500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 28275.4 Da PI: 9.8458 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 1.9e-17 | 23 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+ +W++Ia+++ gR++k+c++rw++ Pavir.3NG070500.1.p 23 RGHWRPGEDEKLRQLVEEHGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 68 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.6e-18 | 75 | 119 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+ E+e+l++a++ +G++ W++I+r ++ gRt++ +k++w+ + Pavir.3NG070500.1.p 75 RRPFTAAEEERLLQAHRAHGNR-WALISRLFP-GRTDNAVKNHWHVV 119 679*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.905 | 18 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-29 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-14 | 22 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-17 | 23 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 24 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.08E-14 | 26 | 67 | No hit | No description |
PROSITE profile | PS51294 | 25.692 | 70 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-15 | 75 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 77 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.20E-12 | 77 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAPSSSTTTS GRANSRSQPP CPRGHWRPGE DEKLRQLVEE HGPQNWNSIA EKLEGRSGKS 60 CRLRWFNQLD PRINRRPFTA AEEERLLQAH RAHGNRWALI SRLFPGRTDN AVKNHWHVVM 120 ARRRRSYQRS AAGALLAAPG TAGCSPPPRR PPFQCFHFGG PPASAKTTTG NLCFATPGSG 180 PSTSLVSSSG TFSVRKCHAP TNVAFSSPRE AAAAPEDDDH RHDGMVRDEH GGTDDDDEDG 240 GGAAAKKKDV PFIDFLGVGI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 19 | 123 | 3 | 107 | B-MYB |
1h88_C | 7e-30 | 19 | 123 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-30 | 19 | 123 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 129 | RRSYQRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG070500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972498 | 1e-118 | EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809406.1 | 1e-141 | transcription factor CSA-like | ||||
TrEMBL | A0A3L6RBZ8 | 1e-147 | A0A3L6RBZ8_PANMI; Transcription factor MYB44-like | ||||
STRING | Pavir.Cb01957.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 3e-58 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG070500.1.p |