PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG031100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 400aa    MW: 40434.2 Da    PI: 6.4547
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG031100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.33.8e-40942373129
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..k 89 
                          ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+ +  + s +s a++   +  +
  Pavir.3NG031100.1.p  94 VAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANYSsLNISIRSGAAAAA-NptR 182
                          789*****************************************************************77732333333222222.2353 PP

                  TCP  90 aaksaa.kskksqksaasalnlakesr................akarararertrek 129
                          aa++ a   ++ +++aa   ++++ s                 +  +a  r+r re+
  Pavir.3NG031100.1.p 183 AAPFPAlALHPHHHQAA--PAPHDMSAmmgyhhhllppqqqdpSAGDAYMRKRYRED 237
                          33333323333333333..33333333333333344444444433344444555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-3699236IPR005333Transcription factor, TCP
PROSITE profilePS5136928.3199153IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDHGGGGGGG GGAPSSSNSA GATAAAGGAS GGHPFYYAGP AGSNSGVPQQ QQPSPFAGAL  60
AITPVPEQAQ PSSAAGADKK ALVPAAAPAA GPVVAKRPSK DRHTKVDGRG RRIRMPALCA  120
ARVFQLTREL GHKSDGETIE WLLQQAEPAI LAATGTGTIP ANYSSLNISI RSGAAAAANP  180
TRAAPFPALA LHPHHHQAAP APHDMSAMMG YHHHLLPPQQ QDPSAGDAYM RKRYREDLFK  240
EDDDRQDPSA PKAREQQAAT PPPPPSAAMW AVGPNAAAPS GGFWMLPVSA SSAAAARPAE  300
QPMWSFSGGG GGTATVQAPL QFMSRASYPS SAGGGGGGMS ETNIGMLAGL NAYNRGGSED  360
QQQHQQPEGD QQHGGEGGGN EEEGGDDSGE ENHGNNSSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.181481e-117root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG031100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808168.10.0transcription factor PCF3-like
SwissprotQ53PH21e-72PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A3L6T4N80.0A0A3L6T4N8_PANMI; Transcription factor PCF3-like isoform X2
STRINGGRMZM2G089638_P011e-151(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.13e-48TCP family protein