PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG025100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 446aa    MW: 50733.2 Da    PI: 6.5645
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG025100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.68e-24121216185
             trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                          +Wt+++v++Li+a +++ e+ ++++          +kk++W+++sk+m erg+ +sp+qC++k+++lnkryk++++  +++ t++ + + 
  Pavir.3NG025100.1.p 121 KWTDSMVKLLITAASYTAEDPGADSgggrrncammQKKGKWKAISKVMGERGCLVSPQQCEDKFNDLNKRYKRLTDLLGRGtTCRIVANP 210
                          7*********************9877777888999********************************************99668888888 PP

             trihelix  80 pyfdql 85 
                           ++d++
  Pavir.3NG025100.1.p 211 ELLDSM 216
                          888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-18119243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEGNNLPSGS LMQGTPYGSL DLHHNHMQMH APNSGNQGFN HPQMASIFPI HLNQVTDSDQ  60
LSEFQFGEHG KANHHHHHHD HHHHQQTKNS MSDDEEHGVN EDATDSQTGK GKKGSAWHRM  120
KWTDSMVKLL ITAASYTAED PGADSGGGRR NCAMMQKKGK WKAISKVMGE RGCLVSPQQC  180
EDKFNDLNKR YKRLTDLLGR GTTCRIVANP ELLDSMPNLS DKTKDDARKI LSSKHLFYEE  240
MCSYHNNNRF SLPEDPALQR SLQLALKCKD EHDARRRTSG DADEDDQSVD TDYEEENDDE  300
HPAVHVNKGT LPMHKRMRYM ADQEDVGFGN SSSSHDCSRR SDPHSIAVDI NKVFPDGTNL  360
ALVQQDLASQ SAEIEKQRME IEAEALELAK QHHKWERFSK KKDRELEKMR LENEQMKIEN  420
RRLELEVRHK ELDLELRLKG NGSQA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.92640.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG025100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9521980.0EU952198.1 Zea mays clone 1220044 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807496.10.0uncharacterized protein LOC112885984
TrEMBLA0A3L6RCD90.0A0A3L6RCD9_PANMI; Uncharacterized protein
STRINGPavir.Cb02026.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-105sequence-specific DNA binding transcription factors