PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG024400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 496aa    MW: 54055 Da    PI: 4.5485
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG024400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS187.87.1e-581314922373
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel......aspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseel 78 
                           +lL++ A+av+++d  +a+a+L+rl +l      +    +       +   la yf+++L++r+++      +  ++ +++    ++++
  Pavir.3NG024400.1.p 131 SDLLVAGARAVEAQDSIRASAILSRLDDLipgvpcR----SchhaaacSSDHLACYFARGLRSRISG------ARAECHPAAAAAPENRM 210
                          679*************************98755442....22334556999****************......5556666666668889* PP

                 GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                           a+++++e+sP++kf+h+taNqaIlea++ +  vH++D+++++G+QW++L+  La   +g+p + +T+v+   +++     + ++ L++f
  Pavir.3NG024400.1.p 211 PAYRMLQELSPFIKFAHFTANQAILEATADDPGVHVVDLNVGEGVQWASLMSDLARH-GGKP-FHLTAVVT--ADDDAGPAAAARWLSEF 296
                          ******************************************************975.4444.67899999..4488888999999**** PP

                 GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFle 255
                          A +l++pf+++ l+ ++ edl+  + + + g +++V+     +       sl   + ++L  vk l+Pk+v++veqe   +d++ ++++e
  Pavir.3NG024400.1.p 297 AGSLNLPFRYSSLHLRSEEDLRGFTTSGNGGGSVIVSYDTTDKPYS----SLIRLQMQLLGSVKILRPKLVILVEQEpfrIDRSLAPLAE 382
                          *************999999999888888889999999887443333....44444579*******************988888999**** PP

                 GRAS 256 rflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                           f+e l++++a  +sle+ +           vE+e lg+ i+++v + +              +  e  GF++ +ls+++ +q k+l   
  Pavir.3NG024400.1.p 383 FFCEVLQHFAATRESLESCFRDGGygACLGPVEKETLGPMIEDAVRQYEPV----AG-----GAGAELEGFRARELSSFNFAQGKMLAGL 463
                          *******************977767777889**************988876....22.....3456889********************* PP

                 GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaW 373
                          ++ +g+ v +e+g l l+W++rpL+svS+W
  Pavir.3NG024400.1.p 464 FS-RGFGVVQEEGRLALCWNSRPLTSVSVW 492
                          *9.*************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.175104474IPR005202Transcription factor GRAS
PfamPF035142.5E-55131492IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MPNRGSKVPS RQFVLSEDII QMETMSYPCS PIIPFPTQHE ESSYLLWSPQ VVIPFENGNM  60
CDGDADPSPD QQQQDHEFMD IMIQEANRLL LQDDLSNGDP LLSGFDQRLE GQENGSLLAV  120
QEEFIEESSL SDLLVAGARA VEAQDSIRAS AILSRLDDLI PGVPCRSCHH AAACSSDHLA  180
CYFARGLRSR ISGARAECHP AAAAAPENRM PAYRMLQELS PFIKFAHFTA NQAILEATAD  240
DPGVHVVDLN VGEGVQWASL MSDLARHGGK PFHLTAVVTA DDDAGPAAAA RWLSEFAGSL  300
NLPFRYSSLH LRSEEDLRGF TTSGNGGGSV IVSYDTTDKP YSSLIRLQMQ LLGSVKILRP  360
KLVILVEQEP FRIDRSLAPL AEFFCEVLQH FAATRESLES CFRDGGYGAC LGPVEKETLG  420
PMIEDAVRQY EPVAGGAGAE LEGFRARELS SFNFAQGKML AGLFSRGFGV VQEEGRLALC  480
WNSRPLTSVS VWSPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2417449454380Protein SCARECROW
5b3h_A2e-2417449453379Protein SCARECROW
5b3h_D2e-2417449453379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG024400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809511.10.0nodulation-signaling pathway 2 protein-like isoform X2
TrEMBLA0A2S3H6390.0A0A2S3H639_9POAL; Uncharacterized protein
STRINGPavir.Cb01937.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-27GRAS family protein