PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG011300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 241aa    MW: 26551.3 Da    PI: 6.7867
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG011300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.42.9e-19131403127
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee.v.ikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknratksgyWk 84 
                          +GfrF+P+  e  ++yL + ++g +++++    i+++d+y +eP +L ++++   ++ + +fF++ + +++    + ++++ra+ +g W+
  Pavir.3NG011300.1.p  13 RGFRFDPKPLEAATYYLPQLLAGAPMHETVrPfIHHADVYACEPGELARQFRPlpRTGHRFFFTHCKLQQPhragKASKATRAAGAGSWH 102
                          7************************66533235**************86544433455889999988887744445668889999***** PP

                  NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          ++   +++++ k+ + g  + L +     + g  tdW+m+ey+
  Pavir.3NG011300.1.p 103 SQSV-TDIVDGKQVKAGEMRKLRYK----KGGAYTDWLMDEYS 140
                          9987.56667699999*9*****98....456789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-217161IPR003441NAC domain
PROSITE profilePS5100521.81111161IPR003441NAC domain
PfamPF023653.8E-1113140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAMPSLGPEI FFRGFRFDPK PLEAATYYLP QLLAGAPMHE TVRPFIHHAD VYACEPGELA  60
RQFRPLPRTG HRFFFTHCKL QQPHRAGKAS KATRAAGAGS WHSQSVTDIV DGKQVKAGEM  120
RKLRYKKGGA YTDWLMDEYS CCLQDAVVGD RQYVFCNIYV SPRAAPGSAA RQESAAFFAP  180
PAPVVIAQAP PPPPKRPAMK ALDEVVPTAE AEEAPANSMM TDDEMEQHLL SLLDDDDHIL  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.160061e-66stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG011300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980141.11e-100pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA0A3L6Q4761e-115A0A3L6Q476_PANMI; Uncharacterized protein
TrEMBLA0A3L6RC401e-116A0A3L6RC40_PANMI; Uncharacterized protein
STRINGPavir.Cb02140.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.19e-13NAC domain containing protein 53