PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG007600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 330aa    MW: 36128.6 Da    PI: 4.4601
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG007600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.84.3e-19151411126
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknratk.sg 81 
                          +pp++rF Pt  el+ +yL++ v++       e e ++  +d+y+++P +L +   ++ +++ +wyf + ++ k  + g+r +ra++  g
  Pavir.3NG007600.1.p  15 VPPCYRFTPTAPELIRCYLNPWVANPGqtpfGEPEGIVCAADVYSADPGTLTSrlrRFGHDDGNWYFLCVTRWKDGNaGTRMTRAVRgGG 104
                          599********************987755542222467788**********853445666777******9999988669*****666489 PP

                  NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                          +W+ +gk  +v s      g ++t+ +    +  g k+ W+m+e+
  Pavir.3NG007600.1.p 105 TWHGSGKRIAVRS-----HGYRQTFEYR---DAAGGKSAWLMEEF 141
                          9**9999877777.....79******96...67788********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-237163IPR003441NAC domain
PROSITE profilePS5100523.55715163IPR003441NAC domain
PfamPF023654.1E-1416141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEQQGGMEQA RWPDVPPCYR FTPTAPELIR CYLNPWVANP GQTPFGEPEG IVCAADVYSA  60
DPGTLTSRLR RFGHDDGNWY FLCVTRWKDG NAGTRMTRAV RGGGTWHGSG KRIAVRSHGY  120
RQTFEYRDAA GGKSAWLMEE FGTSMPEATD GEGVRVICRV HRTPRAAAGG DGGEEHQEET  180
DEVQFRSSKR QRDTLNHEHD FAAADYWTTA ALPDAGCSYA STSQTTPVDN GAASTTTWQM  240
QLMMEQGVGY HPTGINGGED IKGEPEPEPL EMLPADMGWQ QFAEMGYGFG YAAEDARMNE  300
WMLSTFSCPQ PADGAAQEGD DPRDETGAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG007600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826981.10.0NAC domain-containing protein 30-like
TrEMBLA0A2T7E4Y70.0A0A2T7E4Y7_9POAL; Uncharacterized protein
STRINGPavir.Ha01862.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.15e-13NAC-domain protein 101