PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG574400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 290aa    MW: 31079.6 Da    PI: 7.727
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG574400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.4e-1516106199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk+l     l +  l++p kf++     +++  + +l+d++grsW+v l  ++  +  + ++GW +Fv+ang+ +g  +vF++ g  +f
  Pavir.3KG574400.1.p  16 FFKIL--LPGLFELSLSIPPKFTAGRA--TAG--KGKLRDPTGRSWDVDLHRDGEHRVSFTGRGWLGFVSANGISAGQLLVFEHRGGLDF 99 
                          56666..334444459******95442..222..5799************666666668889*********************7665555 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                             v +f++
  Pavir.3KG574400.1.p 100 --AVDLFDA 106
                          ..8988886 PP
2B331.92.4e-101942781598
                          -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EEEEE- CS
                   B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvvkvfr 98 
                           l l+k+f+e+ g  + ++++l +    + r+W v ++++ k+++++  +GW eF++ ng+   D + F  l+g++++ l v+v+r
  Pavir.3KG574400.1.p 194 FLDLSKSFCERVGWTSSCDVELLVAGgGEQRRWPVSVKVSAKQSGMM-CGGWTEFAQGNGVGLSDACAFLpLQGSHGRVLGVRVIR 278
                          5789********988778777777775555*******8877766655.55*******************94445577766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-1713109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-1513109IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-1216106IPR003340B3 DNA binding domain
CDDcd100174.24E-1516105No hitNo description
SMARTSM010196.8E-1416107IPR003340B3 DNA binding domain
PROSITE profilePS5086311.87129107IPR003340B3 DNA binding domain
SMARTSM010190.08186277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-12187271IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-7190278No hitNo description
SuperFamilySSF1019364.9E-10191272IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-7194277IPR003340B3 DNA binding domain
PROSITE profilePS508638.318224280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MATMNGVGGG GGRHKFFKIL LPGLFELSLS IPPKFTAGRA TAGKGKLRDP TGRSWDVDLH  60
RDGEHRVSFT GRGWLGFVSA NGISAGQLLV FEHRGGLDFA VDLFDASGCL SDGACRNDDD  120
GSREDDDEEA EQIIQQRTTE TTGDKESGDC RRRPEATTGV KRRKRSPSPS STANTGDDDD  180
TLCRRIERPY QLRFLDLSKS FCERVGWTSS CDVELLVAGG GEQRRWPVSV KVSAKQSGMM  240
CGGWTEFAQG NGVGLSDACA FLPLQGSHGR VLGVRVIRGS GTSTTRGSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150164RRRPEATTGVKRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG574400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432280.0AC243228.1 Panicum virgatum clone PV_ABa011-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807013.11e-116putative B3 domain-containing protein Os04g0346900
TrEMBLA0A3L6T4301e-143A0A3L6T430_PANMI; Uncharacterized protein
STRINGPavir.J34527.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168021012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-10B3 family protein