PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG560000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 34305.4 Da PI: 7.8983 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150.9 | 6.1e-47 | 28 | 159 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 pGfrFhPtd+el+++yL++kv++k +++ ++ikevdiyk++PwdLp+ a++ke+yfF+ r +ky+++ r+nr+t sg+Wkat Pavir.3KG560000.1.p 28 FPGFRFHPTDQELLSFYLTRKVQKKGFSI-DTIKEVDIYKHDPWDLPNearhvVQGAGDKECYFFCLRGRKYRNSIRPNRVTGSGFWKAT 116 69***************************.88**************96466543334889****************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk+++ +ge glkk+Lv+y+g+a +g+ktdW+m e+rl Pavir.3KG560000.1.p 117 GIDKPIHGGaGGECLGLKKSLVYYRGSAGRGTKTDWMMREFRL 159 *******9868888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 50.15 | 27 | 183 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.09E-51 | 27 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-22 | 29 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MEEKKPSEMV KESGGGVEVG TEDDDLVFPG FRFHPTDQEL LSFYLTRKVQ KKGFSIDTIK 60 EVDIYKHDPW DLPNEARHVV QGAGDKECYF FCLRGRKYRN SIRPNRVTGS GFWKATGIDK 120 PIHGGAGGEC LGLKKSLVYY RGSAGRGTKT DWMMREFRLP STAAAAAELQ DAEIWTICRI 180 FKRNMSYNRR CQQQKQEHGS KRSQQQQPQQ QLQYYYDCRY HHQHGASMTS SFDSSEASEA 240 YPTDHHQPLL HGFHGVSSSD KTTAGSSGLM GAPLLPSVSV WSELTTFRDS GSTWDELGRI 300 MEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-48 | 29 | 186 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-48 | 29 | 186 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-48 | 29 | 186 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-48 | 29 | 186 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-48 | 29 | 186 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 8e-48 | 29 | 186 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 8e-48 | 29 | 186 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 8e-48 | 29 | 186 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 8e-48 | 29 | 186 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 8e-48 | 29 | 186 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 8e-48 | 29 | 186 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 8e-48 | 29 | 186 | 22 | 171 | NAC domain-containing protein 19 |
4dul_A | 7e-48 | 29 | 186 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 7e-48 | 29 | 186 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG560000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF282870 | 1e-158 | JF282870.1 Panicum virgatum clone F12_PVCAG-3 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809001.1 | 1e-166 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-75 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A3L6T553 | 0.0 | A0A3L6T553_PANMI; Transcription factor JUNGBRUNNEN 1-like | ||||
STRING | Pavir.Ca02638.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 7e-76 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG560000.1.p |