PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG557900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 182aa    MW: 20311 Da    PI: 8.0621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG557900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.86.7e-47281592128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                           pGfrFhPt++el+++yL++kv++k +++ ++ikevdiyk++PwdLp+        a++ke+yfF+ r +ky+++ r+nr+t sg+Wkat
  Pavir.3KG557900.1.p  28 FPGFRFHPTNQELLSFYLTRKVQKKGFSI-DIIKEVDIYKHDPWDLPNearhvVQGAGDKECYFFCLRGRKYRNSIRPNRVTGSGFWKAT 116
                          69***************************.99**************96466543334889****************************** PP

                  NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          g dk+++   +ge  glkk+Lv+y+g+a +g+ktdW+m e+rl
  Pavir.3KG557900.1.p 117 GIDKPIHGGaGGECLGLKKSLVYYRGSAGRGTKTDWMMREFRL 159
                          *******9868888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100545.52327182IPR003441NAC domain
SuperFamilySSF1019413.4E-4927165IPR003441NAC domain
PfamPF023655.8E-2229159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEEKKPSEMV KESGGGVEVG TEDDDLVFPG FRFHPTNQEL LSFYLTRKVQ KKGFSIDIIK  60
EVDIYKHDPW DLPNEARHVV QGAGDKECYF FCLRGRKYRN SIRPNRVTGS GFWKATGIDK  120
PIHGGAGGEC LGLKKSLVYY RGSAGRGTKT DWMMREFRLP STAAAAAELQ DAVSDSVLTI  180
SD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-452917322161NAC domain-containing protein 19
3swm_B8e-452917322161NAC domain-containing protein 19
3swm_C8e-452917322161NAC domain-containing protein 19
3swm_D8e-452917322161NAC domain-containing protein 19
3swp_A8e-452917322161NAC domain-containing protein 19
3swp_B8e-452917322161NAC domain-containing protein 19
3swp_C8e-452917322161NAC domain-containing protein 19
3swp_D8e-452917322161NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG557900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2828705e-56JF282870.1 Panicum virgatum clone F12_PVCAG-3 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809001.11e-102transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK552e-67NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2T7EJK21e-109A0A2T7EJK2_9POAL; Uncharacterized protein
STRINGPavir.Ca02638.1.p1e-124(Panicum virgatum)
STRINGPavir.J31204.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-68NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]