PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG537400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 772aa MW: 83574.8 Da PI: 6.9813 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.7 | 7.5e-16 | 458 | 498 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+C+CkkskClk+YCeCfaag++Cse C+C++C N+e++ Pavir.3KG537400.2.p 458 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCTCQGCLNTESH 498 689**********************************9975 PP | |||||||
2 | TCR | 52 | 1.4e-16 | 543 | 581 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN Pavir.3KG537400.2.p 543 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNA 581 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.2E-17 | 457 | 498 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.809 | 458 | 583 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.0E-11 | 460 | 496 | IPR005172 | CRC domain |
SMART | SM01114 | 2.5E-17 | 543 | 584 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.7E-12 | 545 | 581 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MDTPDRPRAG AAAGFEDSPV FNFINNLSPI PPPKPSDTAH NVQLFKSSDL APVSSIFASP 60 HVNPAKEPKI LIRDDSVQLP QDLHSPNSVR TRVGSTITFR MIRCRDIVSE NCNINCRLNE 120 APIDSSDHTS NSESQLPQSM QNGVGSVESD KDQCADGKTD LTISQECTDL EGMNLDESGP 180 DKMDSSHSGM DLHESQLSEQ NKDEAVAYNG DYMIANQPSS DMLTLGLPFG TETQSVNDTQ 240 KADNSDSGKS LLSEEPNYYI QNSAHEPHLY WTGRVEGAPV DYTPQALPGA MQSQLMPCNK 300 LNDPQDYMPT EQNGLSQHLR GMRRRSLFNE KAGASNKSVD KASDRHSVNS TTPKCKTIHG 360 DINSKPLRTP PCALPGIGLH LNAFAAIPKE KIVCRDIQSS INESSNLPCP AGSSPPPFEQ 420 NIIKDEFAQR TDVASAEPSS QGSPKKKRRK FDNGDGTSCK RCSCKKSKCL KLYCECFAAG 480 VYCSEPCTCQ GCLNTESHME TVLSTRQQIE SRNPLAFAPK VIHTSEPGLE LGDFSNKTPA 540 SARHKRGCNC KKSSCLKKYC ECFQGGVGCS ISCRCEGCKN AFGRREGVAA LSIEEPKEAS 600 EENNACVKEE KCEIDKQLVI YQAADLAPAE NLLTTPSMVE CRPLACLPPP SSKKSSSEKP 660 RSSTKQVGHP SRLCNSQAPL KTDMLLSQFG NYAEMVLGDS TSDTLKGNSS PQTSVKVVSP 720 NKKRVSPPRM GTGLSPICKS GRKLILKSIP SFPSLGGDLN NEDPKSKTPA S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-15 | 462 | 580 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-15 | 462 | 580 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 444 | 448 | KKKRR |
2 | 444 | 449 | KKKRRK |
3 | 445 | 449 | KKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.11619 | 0.0 | callus| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG537400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809749.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A2T7EJ30 | 0.0 | A0A2T7EJ30_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca02752.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 6e-80 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG537400.2.p |