PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG537400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 772aa    MW: 83823.5 Da    PI: 7.1827
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG537400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.77.5e-16458498242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+C+CkkskClk+YCeCfaag++Cse C+C++C N+e++
  Pavir.3KG537400.1.p 458 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCTCQGCLNTESH 498
                          689**********************************9975 PP
2TCR521.4e-16543581139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN 
  Pavir.3KG537400.1.p 543 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNA 581
                          589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-17457498IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.809458583IPR005172CRC domain
PfamPF036381.0E-11460496IPR005172CRC domain
SMARTSM011142.5E-17543584IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.7E-12545581IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MMICRLLFLT GFCCMQDSPV FNFINNLSPI PPPKPSDTAH NVQLFKSSDL APVSSIFASP  60
HVNPAKEPKI LIRDDSVQLP QDLHSPNSVR TRVGSTITFR MIRCRDIVSE NCNINCRLNE  120
APIDSSDHTS NSESQLPQSM QNGVGSVESD KDQCADGKTD LTISQECTDL EGMNLDESGP  180
DKMDSSHSGM DLHESQLSEQ NKDEAVAYNG DYMIANQPSS DMLTLGLPFG TETQSVNDTQ  240
KADNSDSGKS LLSEEPNYYI QNSAHEPHLY WTGRVEGAPV DYTPQALPGA MQSQLMPCNK  300
LNDPQDYMPT EQNGLSQHLR GMRRRSLFNE KAGASNKSVD KASDRHSVNS TTPKCKTIHG  360
DINSKPLRTP PCALPGIGLH LNAFAAIPKE KIVCRDIQSS INESSNLPCP AGSSPPPFEQ  420
NIIKDEFAQR TDVASAEPSS QGSPKKKRRK FDNGDGTSCK RCSCKKSKCL KLYCECFAAG  480
VYCSEPCTCQ GCLNTESHME TVLSTRQQIE SRNPLAFAPK VIHTSEPGLE LGDFSNKTPA  540
SARHKRGCNC KKSSCLKKYC ECFQGGVGCS ISCRCEGCKN AFGRREGVAA LSIEEPKEAS  600
EENNACVKEE KCEIDKQLVI YQAADLAPAE NLLTTPSMVE CRPLACLPPP SSKKSSSEKP  660
RSSTKQVGHP SRLCNSQAPL KTDMLLSQFG NYAEMVLGDS TSDTLKGNSS PQTSVKVVSP  720
NKKRVSPPRM GTGLSPICKS GRKLILKSIP SFPSLGGDLN NEDPKSKTPA S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1646258014120Protein lin-54 homolog
5fd3_B9e-1646258014120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444448KKKRR
2444449KKKRRK
3445449KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.116190.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG537400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809749.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2T7EJ230.0A0A2T7EJ23_9POAL; Uncharacterized protein
STRINGPavir.Ca02752.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.15e-78Tesmin/TSO1-like CXC domain-containing protein