PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG512900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 153aa MW: 16862.9 Da PI: 7.7886 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.8 | 7.6e-16 | 26 | 85 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + + ++ + ++a++++e+ Pavir.3KG512900.1.p 26 HRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAENARVAARAADIASQYARVEQEN 85 58*****************************************************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.0E-11 | 22 | 77 | No hit | No description |
SMART | SM00338 | 1.2E-17 | 23 | 87 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.3 | 25 | 88 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-12 | 26 | 85 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.31E-10 | 27 | 81 | No hit | No description |
CDD | cd14702 | 1.81E-16 | 28 | 79 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 30 | 45 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006971 | Biological Process | hypotonic response | ||||
GO:0009267 | Biological Process | cellular response to starvation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000693 | Biological Process | positive regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MSSSSLSPAG TGRMSGSDGD SAADTHRREK RRLSNRESAR RSRLRKQQHL DELVQEVARL 60 QAENARVAAR AADIASQYAR VEQENTVLRA RAAELGDRLR SVNEVLRVVE EFSGVAMDIQ 120 EEIPADDPLL RPWQLPYPAA AMPIGGAHML QY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 45 | RRSRLRK |
2 | 39 | 46 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3170 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00419 | DAP | Transfer from AT3G62420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG512900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034289 | 1e-172 | BT034289.1 Zea mays full-length cDNA clone ZM_BFc0009B07 mRNA, complete cds. | |||
GenBank | BT088408 | 1e-172 | BT088408.1 Zea mays full-length cDNA clone ZM_BFc0179N23 mRNA, complete cds. | |||
GenBank | EU964736 | 1e-172 | EU964736.1 Zea mays clone 281235 ocs element-binding factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808697.1 | 1e-100 | ocs element-binding factor 1 | ||||
Swissprot | P24068 | 3e-95 | OCS1_MAIZE; Ocs element-binding factor 1 | ||||
TrEMBL | A0A2T7EHZ0 | 3e-99 | A0A2T7EHZ0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6R976 | 3e-99 | A0A3L6R976_PANMI; Ocs element-binding factor 1 | ||||
STRING | Pavir.Ca02565.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1886 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 4e-30 | basic region/leucine zipper motif 53 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG512900.1.p |
Publications ? help Back to Top | |||
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