PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG505400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C3H

Protein Properties

Length: 578aa MW: 63320.9 Da PI: 5.5833

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG505400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.3	1.7e-10	137	162	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++++GtC+ G+ C+F+H+ Pavir.3KG505400.1.p 137 PGEPDCDYYLKFGTCRLGEHCNFNHP 162 5789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.38	73	101	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0071	73	100	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-5	136	163	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.577	136	164	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.0E-8	138	162	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.4E-5	141	165	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MMEPYTTGGL GGSMLRRRPP QGSFGSSNPD NYDRRERQRL GLPWSPPGWD AAWERARDRD 60 AATAARGARL PERPGEPDCA YYVNFGLCRL GERCKLNHPR DRASLLVGDL VVDGGGRASA 120 WIWKRGAAKL PERPLRPGEP DCDYYLKFGT CRLGEHCNFN HPLDRIYAED PLQHPAGSGS 180 SSSLPESVAP SRLIAQEDPS LSLQHRADSG SSNSQQEAVL HVDDAGLSPS RPAYDEDEAA 240 EPLLLLEHPA DSGSNNQEQE DAVDVGAGIS LQPEPSLPLQ HPADSGIINP ELEVAVDVCA 300 DVSLEAHPFL PLQYPADRGR NDSLPEVAVA VDAELSASTS TAQHVEDDVH GTPDDQIKEQ 360 QNRCTKYSKK VLMFAIITFI DYAVSISSTR YTVLTKASMA ALFVAICSDL FSLKMKPKWC 420 TLVYVSCFHL VLMTTLIFVS LNKDYAYAVL IVPLMIGAPL LQRKLWPQER QQSTSDDRAD 480 EKLDDMFNLA ALILNGGSLT IALISIVRRF ISGPGNYRTG CAAGFLLFFT VVVGLYLMMV 540 TTVRHAALTL HAKYLHNLFI VLVVGTLITT LGPIWFH*

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MMEPYTTGGL GGSMLRRRPP QGSFGSSNPD NYDRRERQRL GLPWSPPGWD AAWERARDRD  60
AATAARGARL PERPGEPDCA YYVNFGLCRL GERCKLNHPR DRASLLVGDL VVDGGGRASA  120
WIWKRGAAKL PERPLRPGEP DCDYYLKFGT CRLGEHCNFN HPLDRIYAED PLQHPAGSGS  180
SSSLPESVAP SRLIAQEDPS LSLQHRADSG SSNSQQEAVL HVDDAGLSPS RPAYDEDEAA  240
EPLLLLEHPA DSGSNNQEQE DAVDVGAGIS LQPEPSLPLQ HPADSGIINP ELEVAVDVCA  300
DVSLEAHPFL PLQYPADRGR NDSLPEVAVA VDAELSASTS TAQHVEDDVH GTPDDQIKEQ  360
QNRCTKYSKK VLMFAIITFI DYAVSISSTR YTVLTKASMA ALFVAICSDL FSLKMKPKWC  420
TLVYVSCFHL VLMTTLIFVS LNKDYAYAVL IVPLMIGAPL LQRKLWPQER QQSTSDDRAD  480
EKLDDMFNLA ALILNGGSLT IALISIVRRF ISGPGNYRTG CAAGFLLFFT VVVGLYLMMV  540
TTVRHAALTL HAKYLHNLFI VLVVGTLITT LGPIWFH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.17207	0.0	leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG505400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Ca02146.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	7e-21	zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Pavir.3KG505400.1.p