PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG499100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 424aa    MW: 46160.6 Da    PI: 6.6395
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG499100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.41.1e-0915126810128
                  NAM  10 tdeelvveyLkkkvegkklelee...........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          td+e+v ++L+++ e++k e++e           + +   +++ +PwdLp++          ++ r+k       +  +t++g Wk+  +
  Pavir.3KG499100.1.p 151 TDKEMV-RFLCERYEQHKREAKEksqslsplaasAAAGGLVVQPDPWDLPRR---------CYAARKKFG-----SDEKTRHGCWKERDN 225
                          788988.788888888775554445556555432333445888899999933.........344444432.....223456799998887 PP

                  NAM  89 dkevlskkgel........vglkktLvfykgrapkgektdWvmheyrl 128
                          + + ++             vg k+tL f+    ++g+ktdW+mhey++
  Pavir.3KG499100.1.p 226 EFTAIRG--DPwlphvlryVGFKTTLEFH---MNDGTKTDWLMHEYAM 268
                          7666654..2223445556**********...68899*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023655.0E-9151267IPR003441NAC domain
PROSITE profilePS5100514.033152290IPR003441NAC domain
SuperFamilySSF1019414.97E-14190288IPR003441NAC domain
SMARTSM006142.9E-4353416IPR003656Zinc finger, BED-type
PROSITE profilePS5080811.409353423IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MENEAAYSAG GHGHFATGYQ DFPMCFPESP YGPCNCNVQD LLLEFNAGLT HLPDPYPAAG  60
DIGHYTAAAA AGVVGGLNSA PPELIQPPQV NAAAGPGPYH AGDTAPYTAT AGMGVLHMES  120
ALPSGSGQAI AGAGLAQPDP YSVDTDLSTA TDKEMVRFLC ERYEQHKREA KEKSQSLSPL  180
AASAAAGGLV VQPDPWDLPR RCYAARKKFG SDEKTRHGCW KERDNEFTAI RGDPWLPHVL  240
RYVGFKTTLE FHMNDGTKTD WLMHEYAMLH HSDGRLFLKE EIVLCNVFSN GKHGVPHPAT  300
VMANDDGEPE DEQYRNNLPH DDHCLHHDVA PPSDQAPSGK RPRAADIAPK IRTGESRVWQ  360
HFAKIFIEVP RETGSKQKDC CSLVYAVCHN CDKVFRASPK NGTSSLRRHA TSCRCKHMHP  420
TSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG499100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808085.10.0uncharacterized protein LOC112886403
TrEMBLA0A2S3HER10.0A0A2S3HER1_9POAL; Uncharacterized protein
STRINGPavir.Ca02464.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2264124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-08NAC domain containing protein 83