PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG487800.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 505aa    MW: 57400.8 Da    PI: 10.0211
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG487800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99.1e-1926115199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkvl     +k+g l++p+kf++++   ++ s +++le ++g++++v++   +  ++ vl++GW++F  a +Lk gD +vF+ +++s f
  Pavir.3KG487800.3.p  26 FFKVL--MGDFKNG-LTIPRKFVANIR--EHLSEEVKLEAPDGKTYTVQV--AREHNELVLRSGWSDFSCAYELKLGDLLVFRNSDKSHF 108
                          77888..5566666.********8886..458889***************..*******************************5444666 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v++f+ 
  Pavir.3KG487800.3.p 109 --KVRIFDP 115
                          ..9999986 PP
2B341.42.6e-132443201290
                          HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           sg+l ++k++a +h  +k  s  ++l +++g ++W ++l +  + ++ +  ++GW +F ++n+L+egD+++F+ ++++++
  Pavir.3KG487800.3.p 244 VSGILAISKDYAMKHLANK--SGIIQLSQLDGsKTWAINLDI--TTKGdCAVSTGWMDFIRDNKLREGDICIFQPSKSKNG 320
                          45789**********6664..4489****9999*******44..3333377889********************8776554 PP
3B353.83.4e-17394486898
                          -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                   B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                          s++ ++  ++l + +++a+++   ++es+t++l+ +      +We  l  r + +ry+l++GW++Fv++n+Lk gD ++F l+ + ++ +
  Pavir.3KG487800.3.p 394 SNTARNnmCLLEFGRDYATKY--LPPESQTMRLRRPGPfkdGTWEAVL--RVQNRRYILGRGWRQFVDDNKLKPGDLCLFNLMTNtKQLT 479
                          333333224445555556555..456888*****9876777*******..999999***************************888**** PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          ++v+++r
  Pavir.3KG487800.3.p 480 MNVHIIR 486
                          ****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-2222118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-2322118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.81623116IPR003340B3 DNA binding domain
CDDcd100175.85E-2224114No hitNo description
PfamPF023621.5E-1526114IPR003340B3 DNA binding domain
SMARTSM010193.8E-1426116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-15226318IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-16227318IPR015300DNA-binding pseudobarrel domain
CDDcd100174.88E-11232312No hitNo description
PROSITE profilePS5086311.575233330IPR003340B3 DNA binding domain
SMARTSM010192.2E-5235327IPR003340B3 DNA binding domain
PfamPF023623.0E-10241320IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-19379486IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-20380486IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-15385486No hitNo description
SMARTSM010194.2E-5387488IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337389488IPR003340B3 DNA binding domain
PfamPF023624.2E-15393486IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MNKSHTVCKE CIANHYWHHM DDRKRFFKVL MGDFKNGLTI PRKFVANIRE HLSEEVKLEA  60
PDGKTYTVQV AREHNELVLR SGWSDFSCAY ELKLGDLLVF RNSDKSHFKV RIFDPSGCEK  120
ELSCVLMDGG PCVQERKVSN GNHMQSSTGK RFAIGNPSVS KKTSKTNPTD SPSQKKNEHV  180
PSSEGTQKPT NSGGGVQKRT KSCIVLPTGY DMTSEQRAQI TTLEQKIQPE PPFYITAMHR  240
RSVVSGILAI SKDYAMKHLA NKSGIIQLSQ LDGSKTWAIN LDITTKGDCA VSTGWMDFIR  300
DNKLREGDIC IFQPSKSKNG VTLIYHPLEE NHRLQPLGHI PSTKTMSPRH GVPKPPYILP  360
WRRTLSDQQM SELDKKVEAI QSKIPIYVAV MHNSNTARNN MCLLEFGRDY ATKYLPPESQ  420
TMRLRRPGPF KDGTWEAVLR VQNRRYILGR GWRQFVDDNK LKPGDLCLFN LMTNTKQLTM  480
NVHIIRLRER STTRLVDRHQ SCSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG487800.3.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808338.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_025808339.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
SwissprotQ2QMT61e-161Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A3L6T2R00.0A0A3L6T2R0_PANMI; Uncharacterized protein
STRINGPavir.Cb00423.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-27B3 family protein