PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG486700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 303aa    MW: 33077.6 Da    PI: 4.7036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG486700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.3e-112302701055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Pavir.3KG486700.1.p 230 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 270
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14220286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12225281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-12229274No hitNo description
PfamPF000103.8E-8230270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEAGGLIAEV GWTEFDFLSH GEESEVMAQL LGAFPSHGEE GHHELPWSDQ ASNAYSDNIG  60
SSLAVPPAYE GYCFSDSNEA LRISSCIAPE DLNSVQEYGA TEFVNMFSNH SPNFYGNGDG  120
SCEDLDDPSI RMLDSASAAN KRKHLAEELD GQTRGRKCAR KGETKRTKRT KQSGDEDASM  180
AIASGSPASC CTSDSESNAS LESADADARP KGKARASRGA TTEPQSIYAR KRRERINERL  240
KILQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIRLLSSDD MWMYAPIAYN GMNIGIDLKM  300
DR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG486700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616595e-48AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806266.10.0transcription factor bHLH139-like isoform X1
RefseqXP_025806267.10.0transcription factor bHLH139-like isoform X1
TrEMBLA0A2S3HF400.0A0A2S3HF40_9POAL; Uncharacterized protein
STRINGPavir.Ca02532.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-54bHLH family protein