PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG484000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 272aa    MW: 28553.9 Da    PI: 7.2383
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG484000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00094109131123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cgk F++   L  H  +H
  Pavir.3KG484000.1.p 109 HACSVCGKAFPSYQALGGHKASH 131
                          67**********99999998887 PP
2zf-C2H210.80.0016185204120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ Cgk F++   L  H 
  Pavir.3KG484000.1.p 185 HECNVCGKAFPTGQALGGHK 204
                          78*********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-8108131No hitNo description
Gene3DG3DSA:3.30.160.600.001108131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.043109131IPR015880Zinc finger, C2H2-like
PfamPF139124.6E-13109133IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.177109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-8180207No hitNo description
PfamPF139122.8E-13184209IPR007087Zinc finger, C2H2
SMARTSM003550.063185207IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.4E-5185207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.388185207IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAVEALLDAA LTPSPEVVPL AEAAATTTSG SGEEEEVEDQ EAKAVTTDER RRRQRAEEGW  60
AKRKRSRRRR EQQQQLLPRE PTEEEYLALC LLMLARGRRD VVEPAPPPHA CSVCGKAFPS  120
YQALGGHKAS HRTKPPPAVV TTSTSAGASA DQQHHQQQQH AAPAPAPSSS SAGSAGAGEG  180
KAAAHECNVC GKAFPTGQAL GGHKRCHYDG TIGSAAAPAR SSRVTSAPAA GGFDLNLPAL  240
PDIPERCGAV PEEEEVLSPL AFKKPRFMIP A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15069RRRQRAEEGWAKRKRSRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG484000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557421e-48EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808181.11e-115zinc finger protein 1-like
TrEMBLA0A3L6R6991e-119A0A3L6R699_PANMI; Zinc finger protein 1-like
STRINGPavir.J06981.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.28e-34zinc-finger protein 2