PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG474700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 209aa MW: 24027.7 Da PI: 7.236 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36 | 2.1e-11 | 75 | 142 | 71 | 128 |
NAM 71 gkrknratksgyWkatgkd.kevlsk.....kgel..........vglkktLvfykgrapkgektdWvmheyrl 128 g+ + r t+sgyWk++ + k++ s + gl++tL fy +++g+ktdWvmhey++ Pavir.3KG474700.1.p 75 GSSSLR-TQSGYWKEKEDEfKAIRSDvgggeG--SssasssspsyQGLRRTLEFY---EHNGTKTDWVMHEYNV 142 445555.799****777651556555876551..14566777888**********...78999*********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 12.845 | 22 | 161 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-14 | 50 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-9 | 53 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEADGAAAIN DAVEEVRRRS LRERGWTIKQ ATEDMRSGEW ERRRRLYRTL QANAGLAEVD 60 PWDLPPRFAM PKEPGSSSLR TQSGYWKEKE DEFKAIRSDV GGGEGSSSAS SSSPSYQGLR 120 RTLEFYEHNG TKTDWVMHEY NVLNGDRFVQ EDVVFRKVFN KKHTDRSPPY FKDVDIALEV 180 YHECLAKHAG TFHPSIIRRH YMRDDVPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG474700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807167.1 | 2e-77 | uncharacterized protein LOC112885745 | ||||
TrEMBL | A0A2S3HEW3 | 4e-76 | A0A2S3HEW3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EIF4 | 3e-76 | A0A2T7EIF4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EIG9 | 2e-76 | A0A2T7EIG9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J14337.1.p | 1e-155 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP41054 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 6e-06 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG474700.1.p |