PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG459700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 579aa MW: 60906.6 Da PI: 6.5077 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 218 | 239 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f ++ C++Gd C +aHg Pavir.3KG459700.1.p 218 PCPEFKKGAGCRRGDMCEYAHG 239 8******88************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.46E-9 | 49 | 133 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.4E-10 | 50 | 137 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 12.965 | 52 | 123 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF13637 | 5.7E-5 | 54 | 103 | No hit | No description |
CDD | cd00204 | 5.70E-8 | 54 | 133 | No hit | No description |
PROSITE profile | PS50088 | 9.885 | 88 | 123 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.8E-4 | 213 | 240 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-4 | 216 | 240 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.258 | 218 | 241 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 87 | 249 | 272 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.925 | 249 | 273 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MADASEAAAA VSARLLELAA EDDAAALGDL LAAHPSLADE PAPWYSPARG AEPMTPLMVA 60 AAYGSVSCLE VLLSPPHLVD PNRASPASLS TALHLAAAGG SSSAPAAVSR LLAAGADPTL 120 LDHLQRRPSD LVALPPNSLP LKNHLLSLLG ARKEWPPDPS LPDIKNGAYA SDDFRMYSFK 180 VRACSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFKKGAGCRR GDMCEYAHGV 240 FESWLHPAQY RTRLCKDGVG CARRVCFFAH TPEELRPLYV SSAGSRSAME MAAAMGMGLP 300 SPGASFTPPL SPSGGGTGVA GAWPQPNVPA LCLPGSAGNL HLSRLRTSLS ARSMAVDELL 360 ASADYDGLVG SPASVRSARG KTLVPSNLDD LFSSEMAGDA ASHSPRYADQ GGAAFSPTRK 420 AAMLNQFQQQ QSLLSPRATA ATIVPEPVSP MSPRLLAALA QREKMQQQTL RSMSSRDLGS 480 DASVLVGSPV TSSWSKWGIP SGTPNWGADD EELGRLKRSS SFELRSGANG DEPDLSWVNT 540 LVKEPTPEKP SINGTTAIES IGTLSQATSH EGIIGGDD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.19003 | 3e-51 | callus| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG459700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808908.1 | 0.0 | zinc finger CCCH domain-containing protein 67-like | ||||
Swissprot | Q2QPW2 | 0.0 | C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67 | ||||
TrEMBL | A0A2T7EHH2 | 0.0 | A0A2T7EHH2_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G027298_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-125 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG459700.1.p |