PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG433800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 280aa    MW: 29983.7 Da    PI: 9.6273
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG433800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.17.9e-45141521128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lppGfrF+Ptdeelvv+yL++++ + +l+++  i++v+i+ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+
  Pavir.3KG433800.1.p  14 LPPGFRFRPTDEELVVHYLRRRALAAPLPAAVDIPDVRILAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKE 101
                          79***************************9666**************43..3447899******************************** PP

                  NAM  90 kevlsk............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k+v ++            +  lvg+k++Lvfy+g+ p+g+ktdWvmheyrl
  Pavir.3KG433800.1.p 102 KPVAVAvavpvpargqaaQAVLVGMKRSLVFYRGKPPTGSKTDWVMHEYRL 152
                          ****988888888665544455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-498183IPR003441NAC domain
PROSITE profilePS5100548.06214183IPR003441NAC domain
PfamPF023652.4E-2615152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEAAKEPAVA KPRLPPGFRF RPTDEELVVH YLRRRALAAP LPAAVDIPDV RILAHDPSDL  60
LPPGWSEQER YFFTCKEAKY VKGRRANRAT GAGYWKATGK EKPVAVAVAV PVPARGQAAQ  120
AVLVGMKRSL VFYRGKPPTG SKTDWVMHEY RLAGAGLAPC RRAGAGAAAR PAEGWVLCRV  180
FRKKGSASAN AAAADPGSDG EAEEAEEEQQ EEEVGAAGGA RAFIDFFARA DAVAAGRREQ  240
QQQGQQQRRA SSPVVSSSCL TDASHEQHGR EQETTSRGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-391418717169NO APICAL MERISTEM PROTEIN
1ut4_B5e-391418717169NO APICAL MERISTEM PROTEIN
1ut7_A5e-391418717169NO APICAL MERISTEM PROTEIN
1ut7_B5e-391418717169NO APICAL MERISTEM PROTEIN
3swm_A5e-391418720172NAC domain-containing protein 19
3swm_B5e-391418720172NAC domain-containing protein 19
3swm_C5e-391418720172NAC domain-containing protein 19
3swm_D5e-391418720172NAC domain-containing protein 19
3swp_A5e-391418720172NAC domain-containing protein 19
3swp_B5e-391418720172NAC domain-containing protein 19
3swp_C5e-391418720172NAC domain-containing protein 19
3swp_D5e-391418720172NAC domain-containing protein 19
4dul_A5e-391418717169NAC domain-containing protein 19
4dul_B5e-391418717169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.207020.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG433800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809222.11e-136NAC domain-containing protein 83
TrEMBLA0A3L6RAA21e-150A0A3L6RAA2_PANMI; NAC domain-containing protein 83
STRINGPavir.Ca02208.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-42NAC domain containing protein 83