PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG404600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 449aa    MW: 48116 Da    PI: 8.4211
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG404600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.8e-116286327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         ++ C++++rt  C++G++CkF+H+p
  Pavir.3KG404600.1.p 62 EPDCSYYMRTALCRFGATCKFNHPP 86
                         789********************97 PP
2zf-CCCH38.81.6e-12107131327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tGtCk+G++CkF+H++
  Pavir.3KG404600.1.p 107 QPECQYYLKTGTCKFGATCKFHHPR 131
                          799********************96 PP
3zf-CCCH314.3e-10153177327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C +++rtG+Ck+ ++CkF+H+p
  Pavir.3KG404600.1.p 153 EKECAYYLRTGQCKFASTCKFHHPP 177
                          679********************97 PP
4zf-CCCH406.6e-13314339227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+f+++tG Ck+G+ CkF+H++
  Pavir.3KG404600.1.p 314 DQPECQFYMKTGDCKFGAVCKFNHPK 339
                          689*********************96 PP
5zf-CCCH37.54e-12359385127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C f++r+G+Ck+G++CkF H++
  Pavir.3KG404600.1.p 359 PGEPVCTFYSRYGICKFGPNCKFDHPM 385
                          5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4555987IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-45986IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-86286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-56487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441104132IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6106133IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10107131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5110132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5149178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587150178IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4150177IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-7153177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455312340IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5312339IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9314339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5315341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5318340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6357384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99358386IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7358385IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9360385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4363383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAAAGAGAAG GGAGGGEGSS SSPAGVAIGP HHHGAAEEVM WQMTLGGGES MEHGPFPERI  60
GEPDCSYYMR TALCRFGATC KFNHPPNRKL AVAAARMKGE YPYRVGQPEC QYYLKTGTCK  120
FGATCKFHHP REKAAIATRV QLNVLGYPIR PNEKECAYYL RTGQCKFAST CKFHHPPPSN  180
TMVAVRGSIY SPGQSATSPG QHTYPGAVTN WTLSRSASFI ASPRWPGHSG YAQVIVPQGL  240
VQVPRWNPYA AQMGSSSSDD QQRTPGTTQY YASSHQSETT GMGEHGVYPS YQPGSVPLGL  300
YAVQGENIFP ERPDQPECQF YMKTGDCKFG AVCKFNHPKE RLIPAPNCAL SPLGLPLRPG  360
EPVCTFYSRY GICKFGPNCK FDHPMGTLMY GTATSPTGDA PTMHYQLASS PGHSERLLDG  420
GSGRSHRISQ TDSQQIPSGN GSTEREAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.121760.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG404600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810066.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A3L6REA40.0A0A3L6REA4_PANMI; Zinc finger CCCH domain-containing protein 66-like isoform X2
STRINGOPUNC12G08520.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-153zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]