PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG378700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 28227.5 Da PI: 7.3734 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.2e-19 | 55 | 104 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r r +lg+f tae+Aa+a+++a++ l+g Pavir.3KG378700.1.p 55 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFATAEDAARAYDRAALLLYG 104 59****999.**********954...5**********************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.9E-39 | 55 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.379 | 55 | 112 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 55 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.72E-18 | 55 | 110 | No hit | No description |
SuperFamily | SSF54171 | 6.41E-21 | 55 | 111 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-30 | 55 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010353 | Biological Process | response to trehalose | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0010896 | Biological Process | regulation of triglyceride catabolic process | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0032880 | Biological Process | regulation of protein localization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MADQDSPLNR SGTSADPDQQ LPPAAAEVAQ GSAGDVDGRK KGKAPKGGPE NGKFRYRGVR 60 QRSWGKWVAE IREPRKRSRK WLGTFATAED AARAYDRAAL LLYGPRAHLN LTSPPPPSLA 120 APRSHPHSSA SASAPPALRP LLPRPAPHQH SGAGAPAAPA FHHHQFQYHL LPPPLQQPTP 180 PLYYASMATA STVTTTVPPR VEPQEPAVAP AVGSSTSPLE PPQVGTPEEA GWEYNGGEEE 240 DYAAALLWDE PEPFFWFDVF LK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 56 | 111 | 6 | 62 | ATERF1 |
3gcc_A | 2e-16 | 56 | 111 | 6 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00674 | SELEX | Transfer from GRMZM2G093595 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG378700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008649551.1 | 8e-99 | ethylene-responsive transcription factor ABI4 | ||||
TrEMBL | Q8L7W9 | 2e-97 | Q8L7W9_MAIZE; AP2 domain transcription factor | ||||
STRING | Pavir.J29572.1.p | 1e-173 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13303 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 8e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG378700.1.p |