PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG336900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 413aa    MW: 45299.5 Da    PI: 6.4359
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG336900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.37e-15299389190
                 FAR1   1 kfYneYAkevGFsvrkskskks.........krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                          ++Yn Y+ e+GF +rk k+++s         ++++    ++f+Cs+ gk+ ++ k+        +++rt+C a+l+++++ ++ w+v   
  Pavir.3KG336900.1.p 299 EYYNLYSWECGFGIRKGKKRYSnnranrklpDDERYQLGQEFNCSCGGKPGDNLKT--------TSSRTQCPAMLRLSRTGNHGWVVVAH 380
                          69***************999998877776655555667899**********99888........999*********************** PP

                 FAR1  82 eleHnHela 90 
                           +eHnHel+
  Pavir.3KG336900.1.p 381 ITEHNHELS 389
                          *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-11299389IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MADPRTIGRN SAQRLSISLD LNQSVHSARV SGVDSTGRAK PHRTNTEGVV CTVHVEQMGV  60
QCIQGVEGLR GSRALVSGDL DASTPRMSCF PALKQKVKSM DLNREASNGE SMRTSAIGGT  120
YLWDEASSTM SSHASHAIEL GGFGCSIEDG STLRALLEDD AVSVSQNSTT MGKSRMHEVF  180
GQTENDDAAN VRERLDWRNN IDLNILPTQS MLLPDAEDKT NEEQSVVGES IIQVSATADA  240
TVGWKRRNII TSGPNCIEDR IGRVSVLQQA LMKFADRTTD CIINPEVGME FDDLHEACEY  300
YNLYSWECGF GIRKGKKRYS NNRANRKLPD DERYQLGQEF NCSCGGKPGD NLKTTSSRTQ  360
CPAMLRLSRT GNHGWVVVAH ITEHNHELSN SYGEKKTVAI TLSLGQVYQR FG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG336900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6PZI22e-56A0A3L6PZI2_PANMI; Uncharacterized protein
STRINGPavir.J00502.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.11e-10FAR1-related sequence 7