PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.3KG300900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 562aa MW: 62078.9 Da PI: 9.2337 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76 | 4.2e-24 | 5 | 104 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + Pavir.3KG300900.3.p 5 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR 93 99****************************963.3445679************************************************3 PP -SSSEE..EEEEE CS B3 85 dgrsefelvvkvf 97 +++el+++v+ Pavir.3KG300900.3.p 94 --GDDGELRLGVR 104 ..37888888876 PP | |||||||
2 | Auxin_resp | 110.3 | 2e-36 | 132 | 211 | 2 | 82 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 aha++tksvF+++YnPr s+seF+++++k++k++++++s+G Rfkm++e++d+ err++G+++g+ d+dp W++SkW++L Pavir.3KG300900.3.p 132 AHAVATKSVFHIYYNPRLSQSEFIIPYSKFMKSFSQPFSAGLRFKMRYESDDATERRYTGIIAGIGDADP-MWRGSKWKCL 211 89********************************************************************.9********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-40 | 2 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.21E-23 | 3 | 105 | No hit | No description |
SuperFamily | SSF101936 | 1.83E-42 | 3 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.8E-21 | 5 | 107 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.112 | 5 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-22 | 5 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.6E-31 | 132 | 211 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 562 aa Download sequence Send to blast |
MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELVAKDL HGTEWRFRHI 60 YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGDDGELR LGVRCAAQLK NGSAFPALYN 120 QCSNLGSLAN IAHAVATKSV FHIYYNPRLS QSEFIIPYSK FMKSFSQPFS AGLRFKMRYE 180 SDDATERRYT GIIAGIGDAD PMWRGSKWKC LMVRWDDDVD FRRPNRISPW EIELTSSVSG 240 SHLSAPNVKR LKPCLPHVNP DYLVPNGSGH PDFAESAQFH KVLQGQELLG YRTRDSAAVA 300 TSQSCEARNM QYIDERSCSN DASNNIPGVP RHGVRTPLGN PGFSYHCSGF GESQRFQKVL 360 QGQEVFRPYR GTLTDSCLRN NAFHQQDGSH APSVANKWHT QLHGCAFRGP PAPLNPSQSS 420 SPPSVLTFQR GNSKMTHFEF GLGPLDKNVD GRPAVLGHAG GIGGTEQTLM LQPHPVSEEV 480 RNRHATVEKF HSVGKEGADN REVNTNSCKV FGISLAEKVP SSKQKECGDA NYPSPFLSLK 540 QQVPKSLGSS CATVSVLWSV T* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-88 | 3 | 241 | 122 | 361 | Auxin response factor 1 |
4ldw_A | 1e-88 | 3 | 241 | 122 | 361 | Auxin response factor 1 |
4ldw_B | 1e-88 | 3 | 241 | 122 | 361 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.9114 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.3KG300900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807170.1 | 0.0 | auxin response factor 15-like | ||||
Swissprot | Q8S985 | 0.0 | ARFO_ORYSJ; Auxin response factor 15 | ||||
TrEMBL | A0A3L6SWS7 | 0.0 | A0A3L6SWS7_PANMI; Auxin response factor | ||||
STRING | Pavir.Ca00928.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-126 | ARF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.3KG300900.3.p |
Publications ? help Back to Top | |||
---|---|---|---|
|