PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG299300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 342aa MW: 36992.7 Da PI: 10.2932 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.6 | 3.8e-14 | 36 | 122 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W++ e+ aL+ a ++ +l+rg+l++++W+ev++++ ++r r+ +qCk++ + l+k+yk++++++ s + +f+ Pavir.3KG299300.1.p 36 CWSDGETAALVGAWGSRYVELNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDVQCKNRVDTLKKKYKAERARNAP------SGWYFFH 119 7*****************************************999999999************************97......4799*** PP trihelix 84 qle 86 +l+ Pavir.3KG299300.1.p 120 ELD 122 998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.7E-26 | 34 | 124 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MEVREMAMAA AAAAAVGGGG AKLPPPNPNL PYREDCWSDG ETAALVGAWG SRYVELNRGN 60 LRQKQWQEVA DAVNSRRGAS ARRRPPRTDV QCKNRVDTLK KKYKAERARN APSGWYFFHE 120 LDRLVGPTLS ASASKRPSPS QAPQFALPFH PPALRNHQSP SPSPPPPPPM ALPLPDYHRG 180 SPLPAAALIQ KAAAAAAAAV SDLEDSDDDG GINNHNSQRS PSHSVSSLSG NNKKRSRDEP 240 GSGGDKGFKE LARAIEAFAE MYERVENAKQ KHELEMERQR IEFLKQLEVK RMENFIDAHV 300 KLARAKRPKK KTTGGAADGA GAMELVATVA SMPFVSTSNL L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6873 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG299300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808496.1 | 1e-172 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A3L6RBB5 | 1e-173 | A0A3L6RBB5_PANMI; Trihelix transcription factor ASIL2-like | ||||
STRING | Pavir.J11649.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2065 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 3e-30 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG299300.1.p |