PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG223100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 601aa    MW: 63284.9 Da    PI: 6.7031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG223100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72e-32253310260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK++kgse+prsYY+C++++Cp+kkkvers  d++v+ei+Y+g+Hnh+k
  Pavir.3KG223100.1.p 253 DDGYNWRKYGQKNMKGSENPRSYYKCSFPSCPTKKKVERSP-DGQVTEIVYKGTHNHPK 310
                          8****************************************.***************85 PP
2WRKY1031.7e-32427485159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+ +d+++v++tYeg+Hnh+
  Pavir.3KG223100.1.p 427 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERACHDTRAVVTTYEGKHNHD 485
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-29244311IPR003657WRKY domain
PROSITE profilePS5081123.456247311IPR003657WRKY domain
SuperFamilySSF1182903.92E-25247311IPR003657WRKY domain
SMARTSM007747.4E-35252310IPR003657WRKY domain
PfamPF031064.5E-25253309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-36412487IPR003657WRKY domain
SuperFamilySSF1182904.58E-29419487IPR003657WRKY domain
PROSITE profilePS5081138.159422487IPR003657WRKY domain
SMARTSM007743.2E-37427486IPR003657WRKY domain
PfamPF031069.0E-25428485IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MPQPVGLGIA ILHRLPLELP SPPRQPPRLS RLPPMTSTPG SFGTLANSGP VALSLATSSF  60
ASFLGGPASG GADSSGLSKF KAMPPPSLPL SHPPASPSSF LNALSGFLDS PILLTPSLFP  120
SPTTGAIPSE PFNWMGTGEN LQPSVKDEQR QYTDFTFQTA AASVPETGAG AARQAASFPQ  180
SSSMLMAPLG GLGDSYNGEL QQQQPWSYQE PAAQFEAPPA AATQPDMLGN GGYTAVPAAV  240
PGFREQSNRP PSDDGYNWRK YGQKNMKGSE NPRSYYKCSF PSCPTKKKVE RSPDGQVTEI  300
VYKGTHNHPK PQSTRRNSSS APAPAASSSY GLQSASDAAA EYSFGALSGA PVATPENSSG  360
SFGDDEINGV SSRLAGNLGG EELDDDEPDS KKWRKAGGDG EAASVAGNRT VREPRVVVQT  420
MSDIDVLDDG YRWRKYGQKV VKGNPNPRSY YKCTTAGCPV RKHVERACHD TRAVVTTYEG  480
KHNHDVPPAR GSSASLYRAA LEAQQAAGYH HHGFVAGGGG GSSSHGAFCG GLLDGGAPTQ  540
AAETGFSMSG FGNTVGTAYS YPSHYQQQQQ QQSEAMYYAA PSAKDEPRDD MSFFEQPLLF  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-35253487877Probable WRKY transcription factor 4
2lex_A5e-35253487877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG223100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566840.0EU956684.1 Zea mays clone 1570668 WRKY70 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809961.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-155WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2S3HB630.0A0A2S3HB63_9POAL; Uncharacterized protein
STRINGPavir.J03800.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-91WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]