PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG209200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 550aa    MW: 60873.2 Da    PI: 5.8562
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG209200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.22.2e-25251602128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyat.gkrknratk....sgyWka 85 
                          ppG++F Pt+ elv+ yL++++eg++l+l +v++e+ +++++P +L  +    +e++wyfF+ r+ ++++   ++nr+++    +++Wka
  Pavir.3KG209200.1.p  25 PPGYHFVPTEAELVDVYLRARIEGRELPL-DVVNEIAVLDWQPGSLVeAYRGYGENKWYFFTAREPSSSNkAGEPNRKVRvpgvKATWKA 113
                          9****************************.99**************8334444889********99888625577776555566899*** PP

                  NAM  86 tgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          tg+  ++ ++       ++ +vg+k++L++ + +a++    +W mhey l
  Pavir.3KG209200.1.p 114 TGSLVPISVQggerqqkEKVVVGTKRVLIYQSSDAED---GKWSMHEYIL 160
                          ********9976655444444*********9666666...69******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-2718177IPR003441NAC domain
PROSITE profilePS5100531.20924177IPR003441NAC domain
PfamPF023651.4E-1625159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MGGTVTARPR PRPQPHELVR QLQFPPGYHF VPTEAELVDV YLRARIEGRE LPLDVVNEIA  60
VLDWQPGSLV EAYRGYGENK WYFFTAREPS SSNKAGEPNR KVRVPGVKAT WKATGSLVPI  120
SVQGGERQQK EKVVVGTKRV LIYQSSDAED GKWSMHEYIL KGHAKIGQYA LCSIQRKQHS  180
DTVDDNAVER SRKDNAVEGS SSSSRKRTRA RKKVDPEKTK KKRTTNKAAS TKKTASRRKN  240
NKTSAPAQEG QHQQEEGAPV SPVKPPCTPP QHQQAPPQAL QQGQKALAVY GVPVLTAPPL  300
QGYPPHPAGM LGDYAPMHEQ DTRAGSFQCD DDMSQCLEIQ NLLMRSCNRE EQLPCYASNE  360
INADSNSQYQ LYQHQDDCEL FALEDQQMYT AQYLCQGSDL FPSDTTQNHD GQHQIYQQEV  420
GGAFGTPDQH TIAQYYDQLP YELMSSSYLP AQGGYYYCSS DQFIASVQGD AAASGSDGDM  480
GLAAADEFDA MRMLRDDDPD EDCVGSQDGS SPEALQSQDP GSRGQQQHSA HGHVCEGPPS  540
RSISDFWTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-171918012168NO APICAL MERISTEM PROTEIN
1ut4_B1e-171918012168NO APICAL MERISTEM PROTEIN
1ut7_A1e-171918012168NO APICAL MERISTEM PROTEIN
1ut7_B1e-171918012168NO APICAL MERISTEM PROTEIN
4dul_A1e-171918012168NAC domain-containing protein 19
4dul_B1e-171918012168NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204222RKRTRARKKVDPEKTKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG209200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7E9V80.0A0A2T7E9V8_9POAL; Uncharacterized protein
STRINGPavir.J10825.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.16e-20NAC domain containing protein 19