PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG206600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 347aa    MW: 36448.3 Da    PI: 7.0864
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG206600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32192249259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dgy+WrKYGqK vk+s +prsYYrCt a+C vkk+vers++dp++v++tYeg+H+h+
  Pavir.3KG206600.1.p 192 VDGYRWRKYGQKAVKNSSYPRSYYRCTAARCGVKKRVERSHQDPSTVITTYEGQHTHP 249
                          5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-33178251IPR003657WRKY domain
SuperFamilySSF1182904.05E-28183251IPR003657WRKY domain
PROSITE profilePS5081130.159186251IPR003657WRKY domain
SMARTSM007741.3E-35191250IPR003657WRKY domain
PfamPF031065.5E-26193249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSAGAGAGGH GGGLYGDPAA AAAADHFAAF DHDDFFFQRS PCAGEGGGSG DGLTTSITDY  60
LQGFLDPAGV GAHLDAPCRF GDAAVKQGMK KVTVQSVRPD GQAGAPVTPN SSVLSSSSCE  120
AGGADEEPRR RSKAGRPEEE EEEEEEEEID GDEGSAADRN CKRSKEKKAR GEKRPRGPRV  180
AFMTKSEVDH LVDGYRWRKY GQKAVKNSSY PRSYYRCTAA RCGVKKRVER SHQDPSTVIT  240
TYEGQHTHPS PASLLIRGGG GGGAYAPPPP LAGLGFRPDL RAMIDNCPHA TRMTTPGSLL  300
LPPAAGGLLQ PTPPRVLQEH RRSSSHLGGY GGVLDIIPSE PGSERA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25182252878Probable WRKY transcription factor 4
2lex_A3e-25182252878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161167KRSKEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG206600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586071e-140KU058607.1 UNVERIFIED: Panicum miliaceum WRKY7-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805394.11e-147WRKY transcription factor 28-like
TrEMBLA0A3L6RBY01e-147A0A3L6RBY0_PANMI; Putative WRKY transcription factor 57
STRINGPavir.J32507.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-41WRKY DNA-binding protein 23