PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG186600.6.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 415aa    MW: 46236.5 Da    PI: 7.5169
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG186600.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.11.6e-1365148998
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          + lk +  ++p +  +++ ++  +s t++++ ++g  +++++  ++  g++vl++GW  F  a++L+e+D++vFk+ g+s+f  +v++++
  Pavir.3KG186600.6.p  65 SRLKDSKQRIPPEVGSHFRKI--TSETIKINAPNGCLYDIRV--SREMGEIVLRSGWDVFSAAHNLEENDSLVFKFFGNSTF--KVQIYS 148
                          556666778999999666766..5679***************..********************************999999..887765 PP
2B344.23.4e-14236321796
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          ++   ks+ +++p   +++   ++  + t++le ++++ ++v    +++++++ l++GW++Fv a+++++gD v+F+++g+s+    v +
  Pavir.3KG186600.6.p 236 TNVDVKSCYISIPSILLKNV-TEEVFKATVKLEAPDSNIYSVSA-AQQSDDEIALQSGWNDFVVAHRVQVGDLVIFRYKGNSRL--EVFI 321
                          455667899******99555.4567889****************.4666667**************************998777..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.96957150IPR003340B3 DNA binding domain
CDDcd100171.25E-1357148No hitNo description
SMARTSM010192.4E-559150IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-1561149IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-1264148IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-1566149IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19218334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-17224330IPR015300DNA-binding pseudobarrel domain
CDDcd100174.34E-13227323No hitNo description
SMARTSM010190.0047229325IPR003340B3 DNA binding domain
PROSITE profilePS5086311.392230325IPR003340B3 DNA binding domain
PfamPF023621.2E-11235320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MMRRYDSMMS LMKISTAAWA IRRCDSMLSS MKISGAAWKS EKVFGDSHPI ILFLIHKPCS  60
VLALSRLKDS KQRIPPEVGS HFRKITSETI KINAPNGCLY DIRVSREMGE IVLRSGWDVF  120
SAAHNLEEND SLVFKFFGNS TFKVQIYSSH GGSQKITSCV SPPSEILEAV LPSTCDRHVS  180
NGNEVPYLRH NQETAEFDYL TSGGSCLTKV QDEKGLEMAH TNRSRVPLYV AVMKTTNVDV  240
KSCYISIPSI LLKNVTEEVF KATVKLEAPD SNIYSVSAAQ QSDDEIALQS GWNDFVVAHR  300
VQVGDLVIFR YKGNSRLEVF ILDRNGCQKT SSCFGKEYVP NAQEMCDDSV KIIDPPHSKV  360
DIIDLSSSSS DDDNNVAAYT EKLARLQKQH FDHCAKSRRI DSTSSQSIKL NHVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG186600.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439346.11e-152B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A1E5W3P11e-167A0A1E5W3P1_9POAL; Uncharacterized protein
STRINGPavir.J03783.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-12B3 family protein