PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG186600.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 402aa    MW: 44983.5 Da    PI: 6.2716
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG186600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-14531351098
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           + ++++++p +  +++ ++  +s t++++ ++g  +++++  ++  g++vl++GW  F  a++L+e+D++vFk+ g+s+f  +v++++
  Pavir.3KG186600.5.p  53 ENFRSCMRIPPEVGSHFRKI--TSETIKINAPNGCLYDIRV--SREMGEIVLRSGWDVFSAAHNLEENDSLVFKFFGNSTF--KVQIYS 135
                          444555******99777766..5679***************..********************************999999..887765 PP
2B344.33.3e-14223308796
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          ++   ks+ +++p   +++   ++  + t++le ++++ ++v    +++++++ l++GW++Fv a+++++gD v+F+++g+s+    v +
  Pavir.3KG186600.5.p 223 TNVDVKSCYISIPSILLKNV-TEEVFKATVKLEAPDSNIYSVSA-AQQSDDEIALQSGWNDFVVAHRVQVGDLVIFRYKGNSRL--EVFI 308
                          455667899******99555.4567889****************.4666667**************************998777..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-1643136IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.39244137IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-1646136IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.7E-747137IPR003340B3 DNA binding domain
CDDcd100171.36E-1452135No hitNo description
PfamPF023629.8E-1352135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-19205321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17211317IPR015300DNA-binding pseudobarrel domain
CDDcd100174.96E-13214310No hitNo description
SMARTSM010190.0047216312IPR003340B3 DNA binding domain
PROSITE profilePS5086311.392217312IPR003340B3 DNA binding domain
PfamPF023621.1E-11222307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGSTCECSLR CQDHHYKNCK GNDEKIRFDD VADEDFNSCM GNKKMRFHVV IDENFRSCMR  60
IPPEVGSHFR KITSETIKIN APNGCLYDIR VSREMGEIVL RSGWDVFSAA HNLEENDSLV  120
FKFFGNSTFK VQIYSSHGGS QKITSCVSPP SEILEAVLPS TCDRHVSNGN EVPYLRHNQE  180
TAEFDYLTSG GSCLTKVQDE KGLEMAHTNR SRVPLYVAVM KTTNVDVKSC YISIPSILLK  240
NVTEEVFKAT VKLEAPDSNI YSVSAAQQSD DEIALQSGWN DFVVAHRVQV GDLVIFRYKG  300
NSRLEVFILD RNGCQKTSSC FGKEYVPNAQ EMCDDSVKII DPPHSKVDII DLSSSSSDDD  360
NNVAAYTEKL ARLQKQHFDH CAKSRRIDST SSQSIKLNHV S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG186600.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439346.11e-164B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A1E5W3P10.0A0A1E5W3P1_9POAL; Uncharacterized protein
STRINGPavir.J03783.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-13B3 family protein