PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG186600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 402aa MW: 44983.5 Da PI: 6.2716 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 2e-14 | 53 | 135 | 10 | 98 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++++++p + +++ ++ +s t++++ ++g +++++ ++ g++vl++GW F a++L+e+D++vFk+ g+s+f +v++++ Pavir.3KG186600.2.p 53 ENFRSCMRIPPEVGSHFRKI--TSETIKINAPNGCLYDIRV--SREMGEIVLRSGWDVFSAAHNLEENDSLVFKFFGNSTF--KVQIYS 135 444555******99777766..5679***************..********************************999999..887765 PP | |||||||
2 | B3 | 44.3 | 3.3e-14 | 223 | 308 | 7 | 96 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ ks+ +++p +++ ++ + t++le ++++ ++v +++++++ l++GW++Fv a+++++gD v+F+++g+s+ v + Pavir.3KG186600.2.p 223 TNVDVKSCYISIPSILLKNV-TEEVFKATVKLEAPDSNIYSVSA-AQQSDDEIALQSGWNDFVVAHRVQVGDLVIFRYKGNSRL--EVFI 308 455667899******99555.4567889****************.4666667**************************998777..4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-16 | 43 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.392 | 44 | 137 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.29E-16 | 46 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.7E-7 | 47 | 137 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.36E-14 | 52 | 135 | No hit | No description |
Pfam | PF02362 | 9.8E-13 | 52 | 135 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-19 | 205 | 321 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-17 | 211 | 317 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.96E-13 | 214 | 310 | No hit | No description |
SMART | SM01019 | 0.0047 | 216 | 312 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.392 | 217 | 312 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-11 | 222 | 307 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MGSTCECSLR CQDHHYKNCK GNDEKIRFDD VADEDFNSCM GNKKMRFHVV IDENFRSCMR 60 IPPEVGSHFR KITSETIKIN APNGCLYDIR VSREMGEIVL RSGWDVFSAA HNLEENDSLV 120 FKFFGNSTFK VQIYSSHGGS QKITSCVSPP SEILEAVLPS TCDRHVSNGN EVPYLRHNQE 180 TAEFDYLTSG GSCLTKVQDE KGLEMAHTNR SRVPLYVAVM KTTNVDVKSC YISIPSILLK 240 NVTEEVFKAT VKLEAPDSNI YSVSAAQQSD DEIALQSGWN DFVVAHRVQV GDLVIFRYKG 300 NSRLEVFILD RNGCQKTSSC FGKEYVPNAQ EMCDDSVKII DPPHSKVDII DLSSSSSDDD 360 NNVAAYTEKL ARLQKQHFDH CAKSRRIDST SSQSIKLNHV S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG186600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439346.1 | 1e-164 | B3 domain-containing protein LOC_Os12g40080 | ||||
TrEMBL | A0A1E5W3P1 | 0.0 | A0A1E5W3P1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03783.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG186600.2.p |