PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG118100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 487aa    MW: 52714.3 Da    PI: 7.0608
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG118100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17162211155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Pavir.3KG118100.1.p 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                          78*******************......55************************997 PP
2AP241.24.2e-13254304155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Pavir.3KG118100.1.p 254 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 304
                          89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-9162211IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-16162220IPR016177DNA-binding domain
CDDcd000181.14E-10163221No hitNo description
Gene3DG3DSA:3.30.730.103.5E-17163220IPR001471AP2/ERF domain
PROSITE profilePS5103217.794163219IPR001471AP2/ERF domain
SMARTSM003803.3E-32163225IPR001471AP2/ERF domain
PfamPF008471.3E-8254304IPR001471AP2/ERF domain
CDDcd000181.94E-24254314No hitNo description
SuperFamilySSF541717.85E-17254313IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-15255312IPR001471AP2/ERF domain
SMARTSM003801.8E-32255318IPR001471AP2/ERF domain
PROSITE profilePS5103215.527255312IPR001471AP2/ERF domain
PRINTSPR003675.2E-6256267IPR001471AP2/ERF domain
PRINTSPR003675.2E-6294314IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MELDLNVAEV APEKTAAMAT SDSGSSESSV LNAEASSGGA APAEEGSSST PPPPAVLEFS  60
ILRSESDAAG ADDDDDATPS PPHHHHQQQP QLITRELFPA AAGPPRPLPQ HWADLGFFRA  120
EPPRPQPDIR ILPHPHATPP APPPVQPQAA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEDDMTQM KSLSKEEFVH  240
VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI  300
KCNGREAVTN FEPSTYDGEL LSEVGTEAGA DVDLNLSISQ PASQSPKRDK NSLGLQLHHG  360
SFEGSELKRT KVDTPHELAG RPHRFPVMTE HPPIWPAQSH PFFTNNESAS RDLNRRPSEG  420
GTGGGVPSWA WKVTAPPPTL PLPLFSSSSS SAAASSGFSN TATTAALATP SYASLRFDPP  480
SSSHHR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.138590.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG118100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4020840.0JX402084.1 Phyllostachys edulis transcription factor AP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806428.10.0floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2S3H7V70.0A0A2S3H7V7_9POAL; Uncharacterized protein
STRINGPavir.J23348.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-98related to AP2.7