PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG077700.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 598aa    MW: 65008.4 Da    PI: 6.5794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG077700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.3e-14441486454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr ++P+      +K++Ka+iLe Av +I +L
  Pavir.3KG077700.4.p 441 SHVEAERQRREKLNKRFCALRAIVPNI-----TKMDKASILEDAVTHITDL 486
                          799***********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-4654243IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.28E-18434501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.15E-16435491No hitNo description
PROSITE profilePS5088817.072437486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-12441486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-18441501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
METEIKEVSI GGFWNEEDKA ICASVLGLDA FTYLTKCGGA ISEGLVAASV LADLQSKLHN  60
LVEADGQSLR WNYAIFWQLA HTKSGGVVLG WGDGSCCEPH DGEIGFATSV GAGDASSVTR  120
KRVRKQVLQR LHTAFAGADE EDYAPGIDQV TDTEIFFLAS MYFSFPRHVG GPGKVFAAGR  180
PLWIPNNDLK VSPANYCYRG FLADAAGFKT IVLVPFKAGV LEVGSIQNVS ESAEALQTIR  240
SLFLGTHSTS TASEKHEDNI SVQISPGSTK IFGKNLSICQ PSAIKAADPS KVDGGSRDEQ  300
KSCSGDSMLL PNLRKGLQNF TWSQARGLNS QQQKFGNGIL VVTSETAQSG DGSVPGTGVS  360
SCQLQEPQQI LTQPPLQPRG PMQIDFRVGS SSKFGVLISQ KAMLDGGDGD IDGLFKEERE  420
DRQPRKRERK PTNGREEQPL SHVEAERQRR EKLNKRFCAL RAIVPNITKM DKASILEDAV  480
THITDLKKKL EKMEAEREKL SELGKVDANE QTTRPEPEVD IQVVHGEILV RVVSPVDNHP  540
IKKVLQAFEE AEVKIHESKV TANDGTVVHS FVIKPPSSEQ NIRNKLLASI SNASRSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-23542439192Transcription factor MYC3
4rqw_B5e-23542439192Transcription factor MYC3
4rs9_A5e-23542439192Transcription factor MYC3
4yz6_A5e-23542439192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.227670.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG077700.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805866.10.0transcription factor bHLH13-like
RefseqXP_025805867.10.0transcription factor bHLH13-like
RefseqXP_025805868.10.0transcription factor bHLH13-like
TrEMBLA0A2S3H6X80.0A0A2S3H6X8_9POAL; Uncharacterized protein
STRINGPavir.Ca00449.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-68bHLH family protein