PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG077700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 611aa    MW: 66428.1 Da    PI: 6.5798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG077700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-14454499454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N++f  Lr ++P+      +K++Ka+iLe Av +I +L
  Pavir.3KG077700.1.p 454 SHVEAERQRREKLNKRFCALRAIVPNI-----TKMDKASILEDAVTHITDL 499
                          799***********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-4667256IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.41E-18447514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-16448504No hitNo description
PROSITE profilePS5088817.072450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-12454499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-18454514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MREVPPVIQA NALMETEIKE VSIGGFWNEE DKAICASVLG LDAFTYLTKC GGAISEGLVA  60
ASVLADLQSK LHNLVEADGQ SLRWNYAIFW QLAHTKSGGV VLGWGDGSCC EPHDGEIGFA  120
TSVGAGDASS VTRKRVRKQV LQRLHTAFAG ADEEDYAPGI DQVTDTEIFF LASMYFSFPR  180
HVGGPGKVFA AGRPLWIPNN DLKVSPANYC YRGFLADAAG FKTIVLVPFK AGVLEVGSIQ  240
NVSESAEALQ TIRSLFLGTH STSTASEKHE DNISVQISPG STKIFGKNLS ICQPSAIKAA  300
DPSKVDGGSR DEQKSCSGDS MLLPNLRKGL QNFTWSQARG LNSQQQKFGN GILVVTSETA  360
QSGDGSVPGT GVSSCQLQEP QQILTQPPLQ PRGPMQIDFR VGSSSKFGVL ISQKAMLDGG  420
DGDIDGLFKE EREDRQPRKR ERKPTNGREE QPLSHVEAER QRREKLNKRF CALRAIVPNI  480
TKMDKASILE DAVTHITDLK KKLEKMEAER EKLSELGKVD ANEQTTRPEP EVDIQVVHGE  540
ILVRVVSPVD NHPIKKVLQA FEEAEVKIHE SKVTANDGTV VHSFVIKPPS SEQNIRNKLL  600
ASISNASRSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-22672569192Transcription factor MYC3
4rqw_B5e-22672569192Transcription factor MYC3
4rs9_A5e-22672569192Transcription factor MYC3
4yz6_A5e-22672569192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.227670.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG077700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805866.10.0transcription factor bHLH13-like
RefseqXP_025805867.10.0transcription factor bHLH13-like
RefseqXP_025805868.10.0transcription factor bHLH13-like
TrEMBLA0A2S3H6X80.0A0A2S3H6X8_9POAL; Uncharacterized protein
STRINGPavir.Ca00449.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-68bHLH family protein