PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG019700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 462aa    MW: 49000.9 Da    PI: 7.8529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG019700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.31.1e-17121433127
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkklel.eev.ikevdiykvePwdLpkkvka..eekewyfFskrdkkya........tgkrknratks 80 
                          +Gfr +Pt  e  ++yL + ++g +l++  +  i+++d+y +eP +L ++++   ++ + +fF++ + +++        ++ +++ra+ +
  Pavir.3KG019700.1.p  12 RGFRLNPTPLEAATYYLPQLLAGAPLHEaVRPfIHHADVYAYEPGELARQFRPlpKSGHRFFFTHCKLQQPhcragnkaSKAKATRAAGA 101
                          7************************55513335**************864444334558899999988888666554434447777788* PP

                  NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          g W+++g +  v   ++ +vg  + L +     + g  tdW+m+ey+
  Pavir.3KG019700.1.p 102 GSWHSQGVTDVVDG-NEVKVGEMRKLRYK----KGGAYTDWLMDEYS 143
                          *******9766655.9999*********8....456789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-199164IPR003441NAC domain
PROSITE profilePS5100522.27910165IPR003441NAC domain
PfamPF023651.6E-912143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MASSLGPEIF FRGFRLNPTP LEAATYYLPQ LLAGAPLHEA VRPFIHHADV YAYEPGELAR  60
QFRPLPKSGH RFFFTHCKLQ QPHCRAGNKA SKAKATRAAG AGSWHSQGVT DVVDGNEVKV  120
GEMRKLRYKK GGAYTDWLMD EYSTCCLQDA VVGDRQYVFC NIYVSPRAAP GSDARQESAA  180
FFAPAPAPAV IAQAPLPLPL PPPPPPPPPP KRPAPQVAEP PGPKRAQGAV VAPAPPVVKP  240
AAGRTAYFAP PRPAVAPPST PSVIRSSPAP APTRLAAPPP APPQPVAQPK QQIFLGGVAP  300
LSTPSVIRSS PASAQPPAPA PTRLVAPPRL PLAPAPPRPL GQPKQQMPAL TPPVARACHM  360
PLQAPAHHCR PQPSAHTKKT TRDPFEAAEL RGEAEESPAA LQDDDFFDED ELAKALDEAV  420
PTAEAEEEAP ANSTMSDDEM EQHLLSLLGN EAVIVPKEET A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG019700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827463.11e-144atherin-like
TrEMBLA0A3L6Q4760.0A0A3L6Q476_PANMI; Uncharacterized protein
STRINGPavir.Ha01903.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.12e-08NAC domain containing protein 89