PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG002200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 368aa    MW: 41109.8 Da    PI: 6.8833
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG002200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.29.3e-51101371128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp+GfrFhPtdeel+v+yL +++++ ++++  +i+ev+iy+++PwdLp+k+  +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk
  Pavir.3KG002200.1.p  10 LPAGFRFHPTDEELIVHYLMNQASSIPCPV-PIIAEVNIYQCNPWDLPAKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDK 98 
                          799***************************.88***************8877899*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++l + ++e++g+kk Lvfy g+ pkg+ktdW+mheyrl
  Pavir.3KG002200.1.p  99 AILLTpTSENIGVKKALVFYGGKPPKGVKTDWIMHEYRL 137
                          **99889999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-634164IPR003441NAC domain
PROSITE profilePS5100558.16210164IPR003441NAC domain
PfamPF023659.5E-2611137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MTSSTRLPNL PAGFRFHPTD EELIVHYLMN QASSIPCPVP IIAEVNIYQC NPWDLPAKAL  60
FGENEWYFFS PRDRKYPNGA RPNRAAGSGY WKATGTDKAI LLTPTSENIG VKKALVFYGG  120
KPPKGVKTDW IMHEYRLTGA NKNTKRRGSS MRLDDWVLCR IHKKSNNFQL SDQDQEGSTV  180
EEESLNNKMN GTITASPKSE ANNDGHDHQF HPTTMAMNKS YSITDLLNTI DYSALSQLLD  240
APAEPEPPLI YPTTTQTHHE ALLNYNNNVN NSHFNMPQVD AYSDHVATNC NGLKRKRVMT  300
MDGAESSFDD DGSSNFSRKL LKLPSDSRSS SHSHFGSTTS SYCNQQLVDT SGFQHSSLLS  360
YPFLEMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-73916914173Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.18240.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG002200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6735450.0JN673545.1 Panicum virgatum cultivar Summer VS16 NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809798.10.0NAC domain-containing protein 67-like
SwissprotK4BWV27e-83NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLG8HYS50.0G8HYS5_PANVG; NAC transcription factor
STRINGPavir.J16651.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-84NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]