PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG002000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 383aa MW: 41480.3 Da PI: 8.3073 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.2 | 6.6e-53 | 16 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdee+++ yL +k + +++ ++i evd++k+ePwdLp+k+k +ekewyfF+++ ky+tg r+nratk+gyWkatgkd+ Pavir.3KG002000.1.p 16 LPPGFRFHPTDEEVITSYLLQKFLNPSFDP-RAIGEVDLNKCEPWDLPSKAKMGEKEWYFFCHKGMKYPTGMRTNRATKEGYWKATGKDR 104 79*************************999.88***************99999************************************* PP NAM 91 evlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ ++elvg+kktLvfy grap+g+kt+Wvmhe+rle Pavir.3KG002000.1.p 105 EIFKPaaaggaGRELVGMKKTLVFYMGRAPRGSKTNWVMHEFRLE 149 ****99998888888***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-61 | 12 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.038 | 16 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-27 | 17 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MVERSIKSEQ GGDLFLPPGF RFHPTDEEVI TSYLLQKFLN PSFDPRAIGE VDLNKCEPWD 60 LPSKAKMGEK EWYFFCHKGM KYPTGMRTNR ATKEGYWKAT GKDREIFKPA AAGGAGRELV 120 GMKKTLVFYM GRAPRGSKTN WVMHEFRLEG KSRHNNANLR FNPKDEWVVC KVHHKNGEAS 180 IKKPAEECSA GTPNVSSVVS DDAGEGDEFL DSMINPMYFN SAASLPSTTT INAAPPHNAD 240 YHSISSAAAG ATTTTTSTFV DLPNYGFSDT ASYNLHQVAV ANSAASTNSS SSYSSFLWNM 300 LNADHNQAMG SYNLHHQAMV AKALGGNYFA GGLPSSSVSG ILQHNSQGVP QQKLGSNYGD 360 STAAIGPAAT NNKNLGAPPV RY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-51 | 14 | 180 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-51 | 14 | 180 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-51 | 14 | 180 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-51 | 14 | 180 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-51 | 14 | 180 | 18 | 173 | NAC domain-containing protein 19 |
4dul_A | 7e-51 | 14 | 180 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 7e-51 | 14 | 180 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.26229 | 0.0 | callus| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Predominantly expressed in developing vascular tissue of the leaves and roots, and in developing flowers. {ECO:0000269|PubMed:15654622}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:15654622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG002000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC840942 | 1e-164 | KC840942.1 UNVERIFIED: Miscanthus lutarioriparius NAC13-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808112.1 | 0.0 | NAC domain-containing protein 45-like | ||||
Swissprot | Q5CD17 | 1e-109 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | A0A3L6PH65 | 0.0 | A0A3L6PH65_PANMI; NAC domain-containing protein 77-like | ||||
STRING | Pavir.J39049.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 2e-80 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG002000.1.p |