PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG635600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 343aa    MW: 35344.9 Da    PI: 6.6216
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG635600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.51.3e-23130192159
                          ---SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg +WrKYGqK++++s+ +prsYYrCt++   gC+++++v+ s+++p+ ++i Y g+H+++
  Pavir.2NG635600.1.p 130 LDDGNSWRKYGQKHIQDSPnNPRSYYRCTHKpdqGCKATRQVQASDDNPSEFVISYYGQHTCR 192
                          58***************9736*********9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-24118194IPR003657WRKY domain
SuperFamilySSF1182909.29E-23124194IPR003657WRKY domain
PROSITE profilePS5081119.875125194IPR003657WRKY domain
SMARTSM007747.4E-33130193IPR003657WRKY domain
PfamPF031069.8E-23131192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAAYSASGGA DGGGRSSPPA AAPRAVVDNL IDIRERTEML RNMLQGSPTP PGTPAVAADA  60
TPGTSELIDG IMNSLSSALS AALDTTAGGH GQGRRRRRAG AVTGSGPQRR STTRRRSHSP  120
FLRTVTTSSL DDGNSWRKYG QKHIQDSPNN PRSYYRCTHK PDQGCKATRQ VQASDDNPSE  180
FVISYYGQHT CRDPSTIPLV IDAAAAPPDD CANLISFGSA TLGLGASTTT LAAVPPQPQA  240
LDPTMFISRM VGYSSSLPAQ DYRCGSEELH SSSASPAAEV AAVVGSAGTT SSAIVGSAPA  300
EYYWGGHGAG SFPSSPSSLG FMTGSFGSFG NAGDDDMFGF DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-24124192269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG635600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586330.0KU058633.1 UNVERIFIED: Panicum miliaceum WRKY31-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802431.11e-165uncharacterized protein LOC112881781
TrEMBLA0A2S3H5191e-164A0A2S3H519_9POAL; Uncharacterized protein
STRINGPavir.Ba00227.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-21WRKY DNA-binding protein 46