PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG633500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 373aa    MW: 40350.7 Da    PI: 6.9579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG633500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.6e-51191461128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL++++++ ++++  +i++vdiyk++PwdLp+k+ +++ e+yfFs+rd+ky++g r+nra+ sgyWkatg+dk
  Pavir.2NG633500.1.p  19 LPPGFRFHPTDEELILHYLRNRAASAPCPV-PIIADVDIYKFDPWDLPSKAVHGDGEYYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDK 107
                          79****************************.88***************77777899********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ +ge vg+kk Lvfykgr p+g+kt+W+mheyrl
  Pavir.2NG633500.1.p 108 PIHDSaTGEGVGVKKALVFYKGRPPRGTKTNWIMHEYRL 146
                          ***9878889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-645182IPR003441NAC domain
PROSITE profilePS5100559.80119182IPR003441NAC domain
PfamPF023651.1E-2620146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMMEMEMEMM MSQAATSQLP PGFRFHPTDE ELILHYLRNR AASAPCPVPI IADVDIYKFD  60
PWDLPSKAVH GDGEYYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH DSATGEGVGV  120
KKALVFYKGR PPRGTKTNWI MHEYRLAAAN PLAAAAAYRP PSKFRNVSMR LDDWVLCRIY  180
NKSGQAASPM VPPLADYEHD DPSSGGFDDI CSFYAPTTSS AAFTQQQQQP ALLPRLPKIP  240
SISELLDEYA FAHILGTAVP AEQDPLAVPA EQDPLAVHPS LNQLLAVGDS AHSIYSPPPA  300
AGGKRKATSS MGPDECAGMA ITAAAAGHHQ HHHPPGKRLN GSCLDAPQPA SALPATSSVL  360
GDLNHHRLPQ LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-7151851171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG633500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0679140.0BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds.
GenBankEU9713990.0EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds.
GenBankKP2979320.0KP297932.1 Zea mays Zma1158 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800259.10.0NAC domain-containing protein 48-like
TrEMBLA0A2T7F0810.0A0A2T7F081_9POAL; Uncharacterized protein
STRINGPavir.Bb03737.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-77NAC-like, activated by AP3/PI