PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG618200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 34363.5 Da PI: 5.3543 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.8e-19 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+llv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Pavir.2NG618200.1.p 26 RGPWTVEEDLLLVNYIAAHGEGRWNALARCAGLRRTGKSCRLRWLNYL 73 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.6e-16 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Pavir.2NG618200.1.p 79 RGSITAQEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122 7889******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.593 | 23 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-30 | 24 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-17 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.15E-13 | 28 | 73 | No hit | No description |
PROSITE profile | PS51294 | 23.162 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-15 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-23 | 81 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-11 | 83 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MAAPDQREMM MSSNEESSVA PGDLCRGPWT VEEDLLLVNY IAAHGEGRWN ALARCAGLRR 60 TGKSCRLRWL NYLRPDLRRG SITAQEQLLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW 120 RTRVQKHARQ LNCDVNSQRF KDLMRYLWMP RLLERIGDDA RATATPPHLP AGPVDDVEVE 180 LSCTTAASSS SVSTPTDGTQ QQQQQLVSPP APPATSAFGE SAPSGYDGSY SSYSNTGTMW 240 DTLCHPPQTD YHPTTAHLEA AACSWSDESL LAPGLSLPYG DMGMVGLPEL ADTMWGAGAD 300 DLWYTQIMGL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-25 | 23 | 126 | 4 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG618200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679434 | 1e-141 | HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802225.1 | 1e-173 | transcription factor MYB2-like | ||||
TrEMBL | A0A2S3H540 | 1e-171 | A0A2S3H540_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7F0A2 | 1e-171 | A0A2T7F0A2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00256.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 8e-80 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG618200.1.p |